Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30920 773 / 0 AtLAP2, LAP2 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1) AT2G24200 766 / 0 Cytosol aminopeptidase family protein (.1.2.3) AT4G30910 733 / 0 Cytosol aminopeptidase family protein (.1) AT2G24150 139 / 1e-35 HHP3 heptahelical protein 3 (.1) AT4G30850 130 / 9e-33 HHP2 heptahelical transmembrane protein2 (.1.2) AT4G37680 105 / 5e-24 HHP4 heptahelical protein 4 (.1.2) AT4G38320 103 / 2e-23 HHP5 heptahelical protein 5 (.1) AT1G34640 94 / 8e-23 peptidases (.1) AT5G20270 99 / 4e-22 HHP1 heptahelical transmembrane protein1 (.1) AT5G13940 81 / 3e-15 aminopeptidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036266 [exp] 783 / 0 AT4G30920 773 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1) Lus10022152 [exp] 669 / 0 AT4G30920 657 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1) Lus10036605 [exp] 281 / 8e-87 AT4G30850 259 / 3e-84 heptahelical transmembrane protein2 (.1.2) Lus10008057 [exp] 100 / 2e-22 AT5G20270 394 / 6e-137 heptahelical transmembrane protein1 (.1) Lus10011713 [exp] 95 / 3e-20 AT4G37680 585 / 0.0 heptahelical protein 4 (.1.2) Lus10025206 [exp] 93 / 9e-20 AT4G37680 584 / 0.0 heptahelical protein 4 (.1.2) Lus10038120 [exp] 81 / 6e-16 AT5G20270 377 / 3e-131 heptahelical transmembrane protein1 (.1) Lus10007709 [exp] 74 / 3e-15 ND 47 / 2e-10 Lus10010605 [exp] 75 / 8e-14 AT4G37680 464 / 7e-164 heptahelical protein 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G106800 [exp] 807 / 0 AT4G30920 873 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1) Potri.006G184500 [exp] 797 / 0 AT4G30920 835 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1) Potri.018G102400 [exp] 159 / 2e-42 AT4G30850 374 / 5e-129 heptahelical transmembrane protein2 (.1.2) Potri.T124407 [exp] 123 / 5e-30 AT5G20270 385 / 2e-133 heptahelical transmembrane protein1 (.1) Potri.018G124754 [exp] 123 / 5e-30 AT5G20270 384 / 4e-133 heptahelical transmembrane protein1 (.1) Potri.002G096700 [exp] 103 / 7e-26 AT1G34640 94 / 3e-26 peptidases (.1) Potri.014G006000 [exp] 102 / 5e-23 AT4G37680 632 / 0.0 heptahelical protein 4 (.1.2) Potri.006G064400 [exp] 99 / 5e-22 AT5G20270 369 / 2e-127 heptahelical transmembrane protein1 (.1) Potri.007G005800 [exp] 98 / 3e-21 AT4G37680 611 / 0.0 heptahelical protein 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF03006 [flax] [poplar] HlyIII Haemolysin-III related CL0223 [flax] [poplar] MACRO PF02789 [flax] [poplar] Peptidase_M17_N Cytosol aminopeptidase family, N-terminal domain CL0035 [flax] [poplar] Peptidase_MH PF00883 [flax] [poplar] Peptidase_M17 Cytosol aminopeptidase family, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10035823 pacid=23147354 polypeptide=Lus10035823 locus=Lus10035823.g ID=Lus10035823.BGIv1.0 annot-version=v1.0 ATGGCCGGCGGGACTATACTCTCATCCATCGCCACTTCCTTCTCCTATTCCCGTTTTCTTCACAACTACTCTTCTCCCTCTAACTTGTTCATCACCAAAT TCAAACTTCAACGTCCTGCTTTGGCTGTTTCTTCTCTGTCTTACTCGCCCTTGAGCTATCGCAGAGGATCACCCAGGAAAATCTCCCACTCAAGTGCTCG TGCCACTCTCGGCTTCACTCAGGCCAAAGTTGTCGAAGTTCCAAAGATTGCCTTCGCTGCTAAAGAGATTGATGGGGTGGAATGGAAAGGTGATTTGCTT GCGGTTGGTGTCATAGAAAAAGACATGGCTAAGTCTGAGAGCTCGAAGTTCGAGAACTCACTTCTCAAGAAGCTGGATTCTCAGCTGGGCGGTATGTTAA GCGATGCCTCTTCTGAGGAGGATTTCACTGGAAAAACAGGTCAGTCCATGGTTCTCAGGCTCCAAGGTTTGAGCACCAAAAGGATATGCTTGATTGGTCT TGGGAAATCTTGTTCAACTACATTTGCTTTCCGAAAATTCGGCGAGGCTTTTGGTGCTGTTGCTAAGTCTACTCAAGCTAACAGTGCGGCTATTACACTA GCTACGACAGACAGCATCTCAGATGAGTCTAAGGTCAACGCTGCTTCGGCAATAGCATCTGGGACTATGTTGGGTTTGTATGAAGACACCAGATACAATT CAGAAGATAGGAAATCGGTGCTCCAATATGTTGATCTCATTGGTTTTGGAAGTGGAGCTGAAATAGAGAAGAAGTTGAAATATGCTGAAGATGTTTCCAC TGCTGTAATCTTTGGGAAAGAACTTGTGAATTCCCCGGCTAATGTTCTCACCCCCGCTGTACTGGCTGAGGAAGCTTCCAAGATTGCTTCGATATACAGT GACGTTTTCTCTGCTACTATCCTGAATGCTGAAAAGTGCAAAGAATTGAAAATGGGGTCATATCTGGGTGTTGCTGCGGCTTCCACAAACCCACCTCATT TCATCCATTTGTGTTACAAGCCCTCAAGTGGACCTGTTAAAGCCAAACTGGCGTTGGTGGGAAAGGGGTTAACTTTTGACAGGCGAGACTTCCATTTCCC CGTTGTTCCCTTTTGTGTAGCAATTGCATTATTCAATAAGTTAACCATTTTAGTACGACCTGATCTCGATGTGATGAGCGGTGGCTACAATATCAAGACA GGAACTAAATCCTCCATCGAGCTCATGAAATTTGATATGGGAGGTTCGGCTGCAGTTCTTGGTGCAGCTAAAGCTATAGGTCAAATTAAACCTTCCGGAG TTGAGGTCCACTTCATCGTTGCGGCTTGTGAGAACTTGATCAGTGGGACTGGTATGAGACCTGGTGATGTACTCACAGCATCAAACGGGAAGACAATTGA GGTGAATAATACTGATGCTGAGGGCAGGCTTACACTTGCGGATGCATTGGTTTATGCTTGCAATCTGGGCGTAGATAAGATTATTGATCTGGCAACGTTA ACTGGTGCCTGCGTAGTTGCTCTTGGACCCTCTATTGCAGGTGTCTTTACACCAAGCCGCGATTTTGCAAAGGAAGTCTTAATGGCAGCAAAGATGAGCG GTGAGAAACTTTGGAGACTGCCACTGGAGGAAAGCTACTGGGAGAAAATGAAGTCAGGAGTAGCTGACATGGCCAATAGCGGTGGTCGCGAGGGAGGTTC CATCACTGCTGCACTATTCCTGAAACAGTTTGTCGATAAGAAAATCCAATGGATGCACATTGACATGGCCGGACCGGTATGGAACAACAACAAGCGTGCA GCAACCGGGTTCGGGATAGCAACAATGAAAATGGGCTCAGCAGAAAATAAGGATGAAGCAGTACTTCGGAGGAGTCTGATAACTCTGGCGGCAGTTATGG TGGTGGTCGGGGTGTGGACCCACTCTCTCACCAAAGTTGGAGCCACTTACATCGTCGGTATGTTTGGGATCGCCGGTATTCTTTTGCCTGACTGGGATTT CTTCGACCGAGATTACTCTCGCTGGCTCTTCCCCGTGAACGAGCAAGAAAAGAAGCACGCTCTTGCTCTCCAATCCAGCAGACGGATTTATCCTCTGAGA CTCATTGGTTACACCCTTGTCTACTCATCCGCTTCGCCGGAAGGAAGGATGAGCAGTAATTGTAGGAAGTCAAGCGCCGCGCCAGCCAAGGAGGAGAAAG AGGACAGAGTAATTAGCTACGATCGGAAGAACAAGAAGGAGAAGAAATTCGAGAGGAGACTGGTCAAATTCAAGGACCTTCCCGAATATTTAAAGGACAA TGAGTTCATACTTGACCATTACCGGTCGGAATGGCCGCTGCGTGACGCGCTATGGAGCGTCTTCTCCTGGCACAACGAAACCCTCAATATCTGGACGCAT GTAGTCGGATTCTTCATCTTTGCCGGACTGACGGTGGTGAGCTGCGTCGGGAGAATAGAGGAGCTGGGAGGATTTCTCACAAGTTTGTGCAGAGGTCGAG ATTCTGGACTGTTAATTGCGACAATGATCATCAATGGCGCCGGCCTCAATGTCTCCGATCCACATTCAAGGCAGAATCCAGAAGCAGAGATGGACACTTT TCCAAAACAAGTCAGTTCCAGTTCGGAGGCCATTCCACAATGGCCATGGTTTTTGTACTTGGCAGGAGCAATGGGGTGCTTACTCTGTAGCTCACTTTCC ACCTCCTAG
AA sequence Show only first row Show all	>Lus10035823 pacid=23147354 polypeptide=Lus10035823 locus=Lus10035823.g ID=Lus10035823.BGIv1.0 annot-version=v1.0 MAGGTILSSIATSFSYSRFLHNYSSPSNLFITKFKLQRPALAVSSLSYSPLSYRRGSPRKISHSSARATLGFTQAKVVEVPKIAFAAKEIDGVEWKGDLL AVGVIEKDMAKSESSKFENSLLKKLDSQLGGMLSDASSEEDFTGKTGQSMVLRLQGLSTKRICLIGLGKSCSTTFAFRKFGEAFGAVAKSTQANSAAITL ATTDSISDESKVNAASAIASGTMLGLYEDTRYNSEDRKSVLQYVDLIGFGSGAEIEKKLKYAEDVSTAVIFGKELVNSPANVLTPAVLAEEASKIASIYS DVFSATILNAEKCKELKMGSYLGVAAASTNPPHFIHLCYKPSSGPVKAKLALVGKGLTFDRRDFHFPVVPFCVAIALFNKLTILVRPDLDVMSGGYNIKT GTKSSIELMKFDMGGSAAVLGAAKAIGQIKPSGVEVHFIVAACENLISGTGMRPGDVLTASNGKTIEVNNTDAEGRLTLADALVYACNLGVDKIIDLATL TGACVVALGPSIAGVFTPSRDFAKEVLMAAKMSGEKLWRLPLEESYWEKMKSGVADMANSGGREGGSITAALFLKQFVDKKIQWMHIDMAGPVWNNNKRA ATGFGIATMKMGSAENKDEAVLRRSLITLAAVMVVVGVWTHSLTKVGATYIVGMFGIAGILLPDWDFFDRDYSRWLFPVNEQEKKHALALQSSRRIYPLR LIGYTLVYSSASPEGRMSSNCRKSSAAPAKEEKEDRVISYDRKNKKEKKFERRLVKFKDLPEYLKDNEFILDHYRSEWPLRDALWSVFSWHNETLNIWTH VVGFFIFAGLTVVSCVGRIEELGGFLTSLCRGRDSGLLIATMIINGAGLNVSDPHSRQNPEAEMDTFPKQVSSSSEAIPQWPWFLYLAGAMGCLLCSSLS TS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Lus10035823 [exp]	0	1
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10041325 [exp]	1.4	0.9149
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043251 [exp]	6.3	0.8774
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	9.8	0.8902
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	11.3	0.8969
AT3G21480			BRCT domain-containing DNA rep...		Lus10037907 [exp]	12.4	0.8704
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10028133 [exp]	12.7	0.8634
AT2G30320			Pseudouridine synthase family ...		Lus10026423 [exp]	15.0	0.8563
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042901 [exp]	16.0	0.8518
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10036027 [exp]	17.2	0.8900
AT3G28460			methyltransferases (.1)		Lus10005835 [exp]	18.0	0.8565

Compare expression of checked genes

Lus10035823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.