Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57990 529 / 4e-175 UBP23 ubiquitin-specific protease 23 (.1) AT2G24640 239 / 1e-69 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 236 / 4e-67 UBP18 ubiquitin-specific protease 18 (.1) AT1G17110 225 / 2e-61 UBP15 ubiquitin-specific protease 15 (.1.2) AT5G65450 221 / 3e-61 UBP17 ubiquitin-specific protease 17 (.1) AT5G46740 213 / 5e-58 UBP21 ubiquitin-specific protease 21 (.1) AT3G14400 206 / 2e-56 UBP25 ubiquitin-specific protease 25 (.1) AT4G24560 210 / 4e-56 UBP16 ubiquitin-specific protease 16 (.1) AT4G17895 202 / 7e-55 UBP20 ubiquitin-specific protease 20 (.1) AT2G22310 137 / 7e-35 ATUBP4 ubiquitin-specific protease 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036607 [exp] 1595 / 0 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10043127 [exp] 257 / 2e-74 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 254 / 3e-72 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10032623 [exp] 257 / 4e-71 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10020116 [exp] 246 / 5e-70 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10026918 [exp] 245 / 9e-70 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10009273 [exp] 225 / 4e-61 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10005591 [exp] 201 / 1e-54 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10013726 [exp] 195 / 1e-52 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G185200 [exp] 593 / 0 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.018G107500 [exp] 586 / 0 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.003G092400 [exp] 265 / 3e-76 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.001G142000 [exp] 261 / 2e-74 AT5G46740 350 / 9e-109 ubiquitin-specific protease 21 (.1) Potri.018G009500 [exp] 250 / 2e-71 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 246 / 8e-71 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.011G095200 [exp] 214 / 3e-58 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.005G156900 [exp] 216 / 6e-58 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.001G378900 [exp] 212 / 7e-57 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.002G104800 [exp] 213 / 9e-57 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10035825 pacid=23147521 polypeptide=Lus10035825 locus=Lus10035825.g ID=Lus10035825.BGIv1.0 annot-version=v1.0 ATGGAAAGTTTAGTAGCTACGGAGCAGATGAGTGATGCGGCGGCAGGGATGGTCGTCAAAGATGGATTTTCGTCGTCGTCTGTCTCCGTTGCTTCTACTA CTATTTCTTCCTCTTTTATTGCTTTGCAGCGGAGGATTGAGTTTCATCCCACGAGGAAGCAGTACAGTGGATTCAGTAGCGGTCGGAATTTCGCGATTGA GACGCTGAACCCGGATTCGGAGAAGAGGCCATCAGGATTGGGGGAGTCGGCGACGGCGCCGGCGGTAGGGTCGAGGCAGGTGGTGGCGAGGAGAGGTGAT ACGGCGATGGATTTGTTGGAGAGTGAGATCAGCACTTTCGATATTACTTTTCAGAGGATTGGTGCTGGTCTGCGGAATATTGGAAATACTTGTTTTCTCA ACTCTGTGTTGCAATGTCTGACATATACAGCACCTTTGGCAGCGTATTTACAAAGTGGCAAGCACAAGAGTTCCTGCCGTATCTCTGGCTTTTGTGCGTT GTGTGCCTTCCAGAAACATGTTAGTCGTGCTTTACAGTCAACTGGGATGTCATTCGTACCTGATCTTGTTTCAAAGATGAGGTGTGTATCTCGCAATCTC AAAGTATCTAAGCAAGAAGATGCACATGAGTACATGGTAAACTTGCTAGAGTCAATGCATAAATGCTGCTTGCCATCTGGAGTCCATAGTGAGTCTCCAG CTGCTTATGAAAGGAGTTTGGTGCACAAAATCTTTGGTGGTCACTTGCGCAGTCAGGTGGAATGCCAGCAATGCTCTTACTGCTCTGACAAATTTGATCC GTTTTTAGACTTGAGCCTTGAAATAAATAGAGCTGAGGCCTTACCTACAGCACTCAAGCACTTCACGGCTGCAGAGTTGTTGGATGGTGGAGAGAAGCAT TATCAATGTCAGCGTTGCAAGCAGAAAGTGAGAGCCAAGAAGCGGCTTACAGTTCATAAACTACCCTATGTGTTGAGCGTTCATTTGAAGCGTTTTTCAT CACATGATCCTGGAAGAAAGATCCAGAAGAAAGTGTCATACGAGCGTTCCTTGGACTTGAGGCCTTTTGTTAGCAATCCTAATGAATGCAACTTGAAGTA CAGCTTATACGGTGTTCTAGTTCATTATGGAAGCAGCGCCCACTGTGGTCACTATGTCTGCTTTGTTCGCACCTCAAGTGGGATGTGGTACTCTCTTGAT GACGAAAAGGTTCATCATGTTGGCGAGAAGACTGTTTTGAACCAGAATGCTTATATGTTGTTTTATGTTCGCGACAGAAAGCATGTGGCTCCAAGGAAAT CACTCGATGATGTTAAAAAAGAAAACAATATTACTGTTGGTGGTAACATCCTGAACATGGTCCCGAAGCAAATGCCAAATGGCGTCTCAATTGGTAACAA AAAGGCTTTGTTAGAGGTTGGCTTGCCAAAGGAAGTATCAGACAAACAGAAGAATGAGCGACTGCAGGCTGAATCTTCAACTAAAAAACCGGATTCAGTT TTGGCATCTTCTCCCAAGGACTTATTACTCCAGGAACCTGGTGTAGCGGAATGCTTGAAATCCTCAAAGTCATCTATAATGGCCAATGTCAGCCTCTCAA CTACACTGAAAGGCTGCACCGTCTCAGGTGCCCAGGGAACCAGTGTGACTGCTGAAGCCTTGTATAGCAGTAATGACGAGCAGAAAAGGGCAACTGGCTT GCTCTCCTCTGATGAGACTTCACAAAAGACTGTCTCTGCTTCCGCCAATAAGACATCAAATACACCCGTTTCGGCTGCGTCAGTTGGTAATGAAGGTCGA TTAGATTCTGCTCCATCGCTGACTAACCTGAACTCTCTTAAGAATCAGGAGGGAGGCATTCCTGCTGATGGTACTGGTGATCAGGTTGGCCCTGAAGTAA ATTCACTTGTCAAGGAGTTGTCAAAATCAGGAACTGTTTTGCCGAAGTCAAATGAGTGTCTCCTTCAAAGTGCACCTCCTGGCAGTCCACAACAAAGTGT GAAAAAGAAGCTCCTCAAGCACCCTATTCATAAACTGCATTTTAGTACAAAGTTCTTAAGGATATCTCTACTTCAGGGGATAAGTAAGAAAAATAGAAAG CGGAAACAACGGAGTTCAGACACGCTGAAGCTTCTACAACAACAGTTGGAGAAAAAGGAGATCCCTTCATCTGAGAAGGAGCCCTCGACATCCCAGAACT TGGCTCAGCTATCCAGCCCTGCAAATTCTCAGGAGAAGACTAGCACTTGCTGTTTGAAGGAAGAATCTGCAGGTGTCAATGCTGAAGAAAATGTGTTAGG AGAATTCTCACAAAGAAACAGTCAGAATGGTACAGTCCTCGCAACAGTTGAACAATTGGCAACCAGCACCCTCGCAGAAAATGATAAAAGCGATGCAGCA CAGAATGTTATGCCGAAAATTAGCTCTCAGGATTTGAGGAAGGAGGCAGCCTCGGGGTGGAATGATTTAAAACCGCCTCGAAATCGGAATGCGAAACGTG GGGAGATAGTCAACAGCATTGGTTACATAGGAGATGAGTGGGACGAAGAATACGATCAAGGTAAGCGGAAGAAGGTTCGAGCTTCGAAAGTGGAATTCGG GGGACCAAATCTTTTCCAACAGGCTGCCCTTGACAAATCAAAGCACGGTAGCAACGGACGGAAAGTAGATGGAAAGTGGATGCGTAAGGAGAAAAGAAGG CAATGA
AA sequence Show only first row Show all	>Lus10035825 pacid=23147521 polypeptide=Lus10035825 locus=Lus10035825.g ID=Lus10035825.BGIv1.0 annot-version=v1.0 MESLVATEQMSDAAAGMVVKDGFSSSSVSVASTTISSSFIALQRRIEFHPTRKQYSGFSSGRNFAIETLNPDSEKRPSGLGESATAPAVGSRQVVARRGD TAMDLLESEISTFDITFQRIGAGLRNIGNTCFLNSVLQCLTYTAPLAAYLQSGKHKSSCRISGFCALCAFQKHVSRALQSTGMSFVPDLVSKMRCVSRNL KVSKQEDAHEYMVNLLESMHKCCLPSGVHSESPAAYERSLVHKIFGGHLRSQVECQQCSYCSDKFDPFLDLSLEINRAEALPTALKHFTAAELLDGGEKH YQCQRCKQKVRAKKRLTVHKLPYVLSVHLKRFSSHDPGRKIQKKVSYERSLDLRPFVSNPNECNLKYSLYGVLVHYGSSAHCGHYVCFVRTSSGMWYSLD DEKVHHVGEKTVLNQNAYMLFYVRDRKHVAPRKSLDDVKKENNITVGGNILNMVPKQMPNGVSIGNKKALLEVGLPKEVSDKQKNERLQAESSTKKPDSV LASSPKDLLLQEPGVAECLKSSKSSIMANVSLSTTLKGCTVSGAQGTSVTAEALYSSNDEQKRATGLLSSDETSQKTVSASANKTSNTPVSAASVGNEGR LDSAPSLTNLNSLKNQEGGIPADGTGDQVGPEVNSLVKELSKSGTVLPKSNECLLQSAPPGSPQQSVKKKLLKHPIHKLHFSTKFLRISLLQGISKKNRK RKQRSSDTLKLLQQQLEKKEIPSSEKEPSTSQNLAQLSSPANSQEKTSTCCLKEESAGVNAEENVLGEFSQRNSQNGTVLATVEQLATSTLAENDKSDAA QNVMPKISSQDLRKEAASGWNDLKPPRNRNAKRGEIVNSIGYIGDEWDEEYDQGKRKKVRASKVEFGGPNLFQQAALDKSKHGSNGRKVDGKWMRKEKRR Q

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10035825 [exp]	0	1
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Lus10026157 [exp]	1.4	0.9456
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10000982 [exp]	3.5	0.9495
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10033331 [exp]	4.9	0.9310
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10015708 [exp]	5.5	0.9334
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	6.3	0.9382
AT5G25757			RNA polymerase I-associated fa...		Lus10038622 [exp]	7.5	0.9416
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	9.5	0.9367
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10023111 [exp]	10.6	0.9322
AT1G26370		RID1	RNA helicase family protein (....		Lus10037067 [exp]	12.0	0.9101
AT1G51350			ARM repeat superfamily protein...		Lus10002562 [exp]	13.6	0.8859

Compare expression of checked genes

Lus10035825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.