Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24230 1041 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G58150 677 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 362 / 2e-109 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G39400 333 / 6e-99 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT3G13380 324 / 7e-96 BRL3 BRI1-like 3 (.1) AT1G55610 322 / 7e-95 BRL1 BRI1 like (.1.2) AT5G45800 310 / 1e-94 MEE62 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) AT2G01950 313 / 6e-92 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT2G02220 289 / 5e-84 ATPSKR1 phytosulfokin receptor 1 (.1) AT2G26330 284 / 2e-82 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036608 [exp] 1602 / 0 AT2G24230 1134 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029235 [exp] 356 / 1e-111 AT5G45800 668 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Lus10007287 [exp] 353 / 2e-110 AT5G45800 657 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 339 / 5e-101 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 336 / 7e-100 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 335 / 1e-99 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 323 / 5e-95 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 322 / 6e-95 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10039132 [exp] 317 / 5e-93 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G107400 [exp] 1191 / 0 AT2G24230 1153 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G185100 [exp] 1188 / 0 AT2G24230 1159 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G058500 [exp] 355 / 2e-111 AT5G45800 709 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Potri.011G067900 [exp] 355 / 3e-111 AT5G45800 731 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Potri.008G140500 [exp] 347 / 4e-104 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G101100 [exp] 342 / 2e-102 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.007G078100 [exp] 342 / 7e-102 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G169600 [exp] 339 / 6e-101 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G472900 [exp] 334 / 4e-99 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.015G141200 [exp] 333 / 3e-98 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10035826 pacid=23147647 polypeptide=Lus10035826 locus=Lus10035826.g ID=Lus10035826.BGIv1.0 annot-version=v1.0 ATGGGTTTAACTTCTTCTTCACAGCATTACAGCTTCTCAGGTCCTTTCTGTTCATGGCAAGGTGTGGTTTGCGATGCGGAGAAAGAGCATGTGGTGGGTT TAACTGCTTCTGGTTTAGGCCTTTCTGGCCCAATTCCTGACATCACAATTGGGAAGCTAAGCAAGCTTCAAACTTTGGATCTCGGCAACAACAAAATCAC TGCTTTGCCCACAGATATGTGGAGTTTGAACTCTCTCAATAGCCTCAACCTCTCTTCTAATACGATTTCTGGCATTCTTCATAACGATATTAGCAATTTT GTTGTCCTGGAAAAGCTTGATCTGTCTGGAAACAGCTTCAGCGGTGAAATCCCTCCAGCTATTGGATCTTTAACTAGCTTGAGAGTTCTTATGCTTCATG GGAATGATTTTGAAGGGAGGATTCCAGTGGAAATTGTGAAATGCATGTCGTTGATTGTTGTGGATCTCTCTTTGAATAAGCTGAATGGGTCATTACCAGC TGGGTTCGAAGCTGCATTCCCCAAGCTAGAAAGTTTGAGCCTTGCAGGAAACGACATTGATGGAAGAGACTCAGATTTCTCACAGTTGCAGTCTTTGACT TCCCTCAACATTTCAGGGAATTTGTTTCAGGGTTCTGTTTCGGGTCTGTTTTTGAACAAGTTGGAGGTAATTGACCTAAGCAGGAACCAGTTCCAAGGTC ACATTTCTCAGGTACAATTCAATTCCAACTTCAGATGGTCTAATTTGGTTCATTTAGACTTGTCAGAGAATCAGTTGAGTGGAGAAATGTTTGGGGATTT CAGTCAAGCTCAGAATCTCAAGTACCTTAATCTTGCATTCAATAGATTTTTTAGGAAGGAATTCCCCAAAGTCGATGGGCTTTGGGGTTTAGAGTATCTC AACTTGTCAAAAGCTAGCCTCATTGGTAACATTCCTCCTGAACTTTCAAAGCTCAGCAATCTCCATACTCTTGATCTTTCCGATAATCATCTTATAGGTG AGATATCTTCTTCATTAACCATGAAAAGCCTCCAAGTTCTTGATGTTTCACATAACAACTTAACTGGCGAAATTCCTTCTCCTGTCCTACAAAAACTGTC ATGGATGGAAAGCTTCAACTTCTCTTACAACAACTTCACCTTCTGTGGTTCTGAAATTTCCCCCGAGAATATCCAAACTTGTTTCATTGGCTCTTTAAAC AGCTGCCCAATTGCTGCAAACCCGGGCCGGTTGAGAAGGAAAGCTACCAATAGCAAAGGACTAAAGCTTGCACTAGCTTTAACCATTTCAATGGTTGGGT TGCTGGTAGGTTTGTTGTTTTTAGCCTTTGGTTGCAGAAGGAAATCAAGAATGTGGCCAGTAAAGCAAATGTCATCGTACAAAGAAGAACAGAACATTTC AGGGCCTTTCTCATTCCAGACAGATTCAACCACTTGGGTTGCAGATGTTAAGCAGGCAAATTCAGTTGGAGTAGTTATATTCGAGAAACCATTGCTGAAC ATAACATTTGCAGACCTCTTGGCTGTAACTTCGAATTTCGATCGAGGCACCCTTCTGGCTGAAGGAAAGTTTGGTCCTGTTTATAGCGGATTTCTACCTG GTGCAATCCATGTAGCAGTGAAAGTACTTGTCCATGGTTCTACATTGACAGAGCAAGAAGCTGCTAGAGAGCTAGAGTATCTGGGTCGAATTAAGCACCC TAATCTTGTTCCCTTAACTGGATATTGTTTGGCTGGTGAGCAAAGGATTGCCATTTATGATTACATGGAGAATGGAAACTTGCAGAATCTATTGCATGAC TTGCCACTTGGTGTTCAAGCCACAACGGACGACTGGAGCAACGATACATGGGAGAAAGATGATGACAACAATGGTGGGATTCAGAATGTAGGATCTGAAG GTTTACTAACAACATGGGCATTCAGGCACAAGATTGCGCTTGGCACAGCTCGTGCATTGGCATTTCTTCACCATGGATGCTCACCACCTATCATTCACAG GGATGTTAAAGCTAGCAGTGTCTATCTGGACTACAACTTGGAGCCAAGGCTATCTGATTTTGGACTAGCCAAACTCTTTGGAAATGGTTTGGACGAGGAG ATAGCTCGCGGATCGCCTGGCTATTGTCCACCGGAGTTTGCTGATCCGGATTATGACCACACACCAACACCAAAGTCTGATGTCTATTGCTATGGTGTCA TTCTTTTTGAGCTCGTCACAGGGAAGAAGCCTACTAATGATGAGTATCCTGAAGAAAAAGATGGCGTACTAGTTAGTTGGGTAAGAGGGTTGGTGAGAAA GAACCAAAGTTCAAGAGCTATTGATCCAAAGATTCGCGGCACTGGAACAGATCGTGACATGGTGGAAGCTCTCAAGATTGGATACCTATGCACAGCTGAT CTTCCATCAAAACGGCCAAGCATGCAGCAGGTAGTTGGACTTCTTAAAGATATTGAACCAAGAAGTTAG
AA sequence Show only first row Show all	>Lus10035826 pacid=23147647 polypeptide=Lus10035826 locus=Lus10035826.g ID=Lus10035826.BGIv1.0 annot-version=v1.0 MGLTSSSQHYSFSGPFCSWQGVVCDAEKEHVVGLTASGLGLSGPIPDITIGKLSKLQTLDLGNNKITALPTDMWSLNSLNSLNLSSNTISGILHNDISNF VVLEKLDLSGNSFSGEIPPAIGSLTSLRVLMLHGNDFEGRIPVEIVKCMSLIVVDLSLNKLNGSLPAGFEAAFPKLESLSLAGNDIDGRDSDFSQLQSLT SLNISGNLFQGSVSGLFLNKLEVIDLSRNQFQGHISQVQFNSNFRWSNLVHLDLSENQLSGEMFGDFSQAQNLKYLNLAFNRFFRKEFPKVDGLWGLEYL NLSKASLIGNIPPELSKLSNLHTLDLSDNHLIGEISSSLTMKSLQVLDVSHNNLTGEIPSPVLQKLSWMESFNFSYNNFTFCGSEISPENIQTCFIGSLN SCPIAANPGRLRRKATNSKGLKLALALTISMVGLLVGLLFLAFGCRRKSRMWPVKQMSSYKEEQNISGPFSFQTDSTTWVADVKQANSVGVVIFEKPLLN ITFADLLAVTSNFDRGTLLAEGKFGPVYSGFLPGAIHVAVKVLVHGSTLTEQEAARELEYLGRIKHPNLVPLTGYCLAGEQRIAIYDYMENGNLQNLLHD LPLGVQATTDDWSNDTWEKDDDNNGGIQNVGSEGLLTTWAFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKLFGNGLDEE IARGSPGYCPPEFADPDYDHTPTPKSDVYCYGVILFELVTGKKPTNDEYPEEKDGVLVSWVRGLVRKNQSSRAIDPKIRGTGTDRDMVEALKIGYLCTAD LPSKRPSMQQVVGLLKDIEPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24230			Leucine-rich repeat protein ki...		Lus10035826 [exp]	0	1
AT2G24230			Leucine-rich repeat protein ki...		Lus10036608 [exp]	1.0	0.8281
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023450 [exp]	7.0	0.7136
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030456 [exp]	11.3	0.7202
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10016910 [exp]	19.2	0.7524
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10005873 [exp]	19.9	0.6666
AT5G39410			Saccharopine dehydrogenase (....		Lus10032995 [exp]	26.1	0.7116
AT2G28780			unknown protein		Lus10005903 [exp]	27.3	0.7082
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10041737 [exp]	34.1	0.6776
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	34.6	0.6780
AT1G77680			Ribonuclease II/R family prote...		Lus10025614 [exp]	35.5	0.6942

Compare expression of checked genes

Lus10035826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.