Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54650 531 / 4e-175 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 459 / 3e-149 AFH3 formin 3 (.1.2) AT5G67470 365 / 5e-112 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G25500 364 / 2e-110 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 350 / 2e-106 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G05470 347 / 2e-105 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 301 / 2e-89 ATFH8 formin 8 (.1) AT1G59910 278 / 6e-80 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 233 / 5e-65 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 215 / 6e-59 ATFH4, FH4 formin homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036609 [exp] 1299 / 0 AT5G54650 581 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10011168 [exp] 667 / 0 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10043077 [exp] 663 / 0 AT5G54650 636 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031585 [exp] 486 / 7e-159 AT4G15200 553 / 0.0 formin 3 (.1.2) Lus10015091 [exp] 486 / 3e-152 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10039705 [exp] 468 / 4e-151 AT5G54650 496 / 1e-163 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10018494 [exp] 434 / 3e-139 AT5G54650 464 / 6e-151 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10019298 [exp] 369 / 1e-112 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 369 / 1e-112 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G131700 [exp] 593 / 0 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 583 / 0 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 500 / 2e-163 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G054900 [exp] 374 / 2e-115 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.014G174700 [exp] 373 / 4e-113 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G140200 [exp] 368 / 1e-112 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 362 / 2e-110 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 361 / 4e-110 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.002G240232 [exp] 357 / 1e-107 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.005G026300 [exp] 352 / 1e-106 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10035827 pacid=23147555 polypeptide=Lus10035827 locus=Lus10035827.g ID=Lus10035827.BGIv1.0 annot-version=v1.0 ATGCAGATTCAGCAGTCAATGGTTCAAGTTAAGATAAGTTTTTGGTTACTTGTGGTCTTCCTGCTATATGTCTCTACTGCCCGGAGCTTCGATCAGGGAG ACGGTGCAGAGGGATTACTTCTCGACAGATTGTTTGATCCAGTGACTGAGGAGGTGGATCAGAGCGTGGCATCACTACTATGGGACAGTTGCAAGCTAGA TCTGATTCGTCTGAAAGAAGATGATGAAGATCTCAACTTCCTTATTCCGGAGGAAACATCTGGCCGACCTGCCAAGCTTAATTTGAAGGCCTGGTCATTG TCAAAACAAGACATGCAGTTTTTTAGAGCACCACATCCACGATTGAGACAAACACTTTTAGATTGTATAAGAAGGAATGATCTTTTATCTACTATCTCTG TTGAAGGACGTGGCTCTTCTATGCAATATCTCAAGCATCTCAACTTCTTACTTGTTAGTTCTTCAGTTCCTGCCAGGAAGTTGCTTGAAAGCATTGCAGA GCCACCAACATCTGTTCCATCTCCCGCACCATCCCCACAGTCAGGATCTTCTATCGATGGGAAACTAAGTTCAAGGGAAGTTCATGCAGCAACCTCTTCA TCTGGTGAAAGTGAGTCTTCTAAAACTGATGGGGAGCCTGGAGGAAATAGTCAAAAGAAGAAAATTATTATTGCAGTGGTTGTTACTGCTGCAATGACAT TCATTTTGGCCGCACTGTTCTTCTTTTTCTGTTCGAAAGTCTTCAGATCGGGATCAGATGCTGGGTTAAATGATGAGAAGCGACTACTTAGCCTAAGCCT AAGTGACTCTGTTAGCTCTTCACACATGTCTTTTAGTACTTTCAGAGAAGAAAAACTTGGGTCACAATCTCTGAACTCAAACGGGAAGAATTCGTCTATA GATGGCAAAATCGTCTCTGATAATGTTGCTTTTGCCTCAATGGAGGGTATTCGAGGTGCTACTAAATCCTCGCCTGAATTGGTTGATACCTCCATGACGG GTAACGGTTTGCTTCCACCTCCTCCAGGAAGGACGCCTGGTCTACCTCCATTGAAGCCTCCCCCAGGGAGGACAGTTCGTCTTCCACCCGAACCACCTGC TCCACATGGGCCTCCTCCTAGCAAGGCTGCACCTTTACCTCCTGCACCTCCACCTCCAACTACGAAACCTTCGGTCTCGGGATCTACTCTGCCTCCTGGA CCTCCCCGTCCACCTCCTCCTACCACACTTGGCCCTCCACCTCCTGCACCTCCCCCAAGGGCTGGTCCAGGTCCTCCTCGAGCACCTCCGCCAATGGCTT CGAAAGTTCCTAAAGCTTCTGATGTGAGGGGTCCTGAGGGAGGTGATAATAAAGCCAAGTTGAAGCCATTTTTCTGGGACAAAGTTCTCGCAAATCCTGA TCAGTCGATGGTTTGGCATCAGATTAAATCGGGATCTTTTCAGTTCAATGAGGAGATGATAGAGACTCTATTTGGTACAGTACCTCAGAAGAGCAAAGTA AACGGGGAAAAAAGCTATTCACAGGAACCTTCTTCACAGTTTATTCAAATTTTGGATCCTAGGAAGGCTCAAAACTTAGCAATTCTACTCCGTGCTCTGA ATGTTACAACAGAAGAAGTCTCTGATGCTCTGCTTGAAGGAAATGAGCTTCCTGCTGAGCTCCTTCAAACTTTGATGAAGATGGCACCTACTTTGGACGA AGAACTGAAACTTAGGCTATTCAGTGGTGAACTTTCACAACTGGGGCCTGCTGAGCGATTCCTTAAAGCATTGGTTGATATACCTTTTGCTTTTCATCGA ATGGAAGCACTTTATTTCATGGGCACTCTAGAGGAGGAGATTGCTAGTGTGACTGAGTCCTTCCGAACTTTAGAGGTTGCTAGTAATGAACTGAGGAGTA GCCGGTTGTTCCTAAAGCTTCTAGAAGCGGTCCTGAAAACTGGAAACCGGATGAATGATGGTACATTCCGAGGTGGTGCACAGGCATTCAAGCTTGACAC TCTTCTCAAATTATCTGACGTGAAAGGGGTAGATGGCAAGACCACACTGTTGCATTTTGTGGTTCAGGAGATAGTCCGATCCGAAGGAGCGAGGGCTGCC CATGCAAGGAGAGAGAGTAGCAGTTTGTCCAATAATGAGGAGATGTCTCCAGATACAGAAGACTACTACTGTGCACTTGGTCTTGAAGTGGTTTCTCGTT TGAGCAGCGAACTGGAAAATGTGAAGAAAGCAGCTGCTATCGATGCTGACGCCCTGACAGGAACTGTTTCTAGACTTGGTCATTCGCAGCTGAAAACTCG AGACTTTTTGAATAAAACGATGAATGGATCAGAGGATAGCCGGTTTCATGAAGTACTGAAGAGCTTCGTTCAGAGTTCTGAAGGTGAAGTCACGTCATTG CTCCAGGAAGAAAAGAGAATTACAGCGCTGGTAAAGAGAACCGGCGATTACTTCCATGGGAATTCAGGCAGGGACGAAGGGTTACGTTTGTTTATAGTAG TACGGGACTTCTTAATAATGTTAGAGAAGGTGTGCAAAGAGGTAGACGCAGCACAGAAGAAGTCGAGCAAAGCGGTTCAGAAAGAGGGTTCTACTGCTTC ATCAAACTCAAACTCCACCATTGCGCAAAGCCAACCTCCGCGGTTGGATCCTCGTTCAAAGCTGATTCCTGCAATTGCAGAGAGGAGACCTCAAAGTTCC GAGAGTTCAGACGACAGTGAGTAA
AA sequence Show only first row Show all	>Lus10035827 pacid=23147555 polypeptide=Lus10035827 locus=Lus10035827.g ID=Lus10035827.BGIv1.0 annot-version=v1.0 MQIQQSMVQVKISFWLLVVFLLYVSTARSFDQGDGAEGLLLDRLFDPVTEEVDQSVASLLWDSCKLDLIRLKEDDEDLNFLIPEETSGRPAKLNLKAWSL SKQDMQFFRAPHPRLRQTLLDCIRRNDLLSTISVEGRGSSMQYLKHLNFLLVSSSVPARKLLESIAEPPTSVPSPAPSPQSGSSIDGKLSSREVHAATSS SGESESSKTDGEPGGNSQKKKIIIAVVVTAAMTFILAALFFFFCSKVFRSGSDAGLNDEKRLLSLSLSDSVSSSHMSFSTFREEKLGSQSLNSNGKNSSI DGKIVSDNVAFASMEGIRGATKSSPELVDTSMTGNGLLPPPPGRTPGLPPLKPPPGRTVRLPPEPPAPHGPPPSKAAPLPPAPPPPTTKPSVSGSTLPPG PPRPPPPTTLGPPPPAPPPRAGPGPPRAPPPMASKVPKASDVRGPEGGDNKAKLKPFFWDKVLANPDQSMVWHQIKSGSFQFNEEMIETLFGTVPQKSKV NGEKSYSQEPSSQFIQILDPRKAQNLAILLRALNVTTEEVSDALLEGNELPAELLQTLMKMAPTLDEELKLRLFSGELSQLGPAERFLKALVDIPFAFHR MEALYFMGTLEEEIASVTESFRTLEVASNELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIVRSEGARAA HARRESSSLSNNEEMSPDTEDYYCALGLEVVSRLSSELENVKKAAAIDADALTGTVSRLGHSQLKTRDFLNKTMNGSEDSRFHEVLKSFVQSSEGEVTSL LQEEKRITALVKRTGDYFHGNSGRDEGLRLFIVVRDFLIMLEKVCKEVDAAQKKSSKAVQKEGSTASSNSNSTIAQSQPPRLDPRSKLIPAIAERRPQSS ESSDDSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10035827 [exp]	0	1
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10036609 [exp]	1.0	0.9335
AT1G70730		PGM2	phosphoglucomutase 2, Phosphog...		Lus10034595 [exp]	1.4	0.9147
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	2.8	0.9077
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	3.9	0.9126
AT5G49610			F-box family protein (.1)		Lus10028682 [exp]	4.9	0.8891
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	6.2	0.8798
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10000883 [exp]	13.3	0.8530
AT2G45010			PLAC8 family protein (.1.2)		Lus10038926 [exp]	14.1	0.8754
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013486 [exp]	15.1	0.8555
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10007952 [exp]	15.5	0.8411

Compare expression of checked genes

Lus10035827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.