Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68390 399 / 4e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 368 / 9e-125 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G21310 360 / 5e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 358 / 3e-121 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 357 / 2e-120 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 346 / 1e-116 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 342 / 8e-115 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 341 / 2e-114 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 312 / 6e-103 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 308 / 1e-98 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036610 [exp] 778 / 0 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035145 [exp] 359 / 6e-123 AT1G68390 393 / 6e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10034349 [exp] 365 / 2e-122 AT1G68390 387 / 3e-131 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031958 [exp] 362 / 1e-121 AT1G68390 403 / 2e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 358 / 6e-121 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 358 / 6e-121 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 355 / 2e-119 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 358 / 1e-118 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10003499 [exp] 352 / 1e-118 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121800 [exp] 435 / 1e-151 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 422 / 2e-146 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 380 / 1e-129 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 373 / 4e-127 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 369 / 1e-125 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 367 / 1e-124 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 364 / 8e-124 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 363 / 4e-123 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 351 / 2e-118 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 349 / 1e-117 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10035828 pacid=23147603 polypeptide=Lus10035828 locus=Lus10035828.g ID=Lus10035828.BGIv1.0 annot-version=v1.0 ATGATCAAGAGAAAGAGCGAACAGCAATTGCGCGGCCCGCAGGCATTGTTCAAGCTAATCAACGGGCAGAAGCGTTTCCAGAGCTTCGTCATCTATTTTC TCCTCTTCGGCTGCGGATTAGCATTCGGCGTCACCGTATGTCTCTACCTCCGTGACATTTCTTACTACTTGCGCCTCTACCAATTCTCAACGCACCCGCC CACTACTCCTCCTAATCCAGAATCACACCTCCTGCTTAATTCAAACCCATCCATCACCACTTCAACAACCGGCACGTCCTCGTCCACGAAAGACGACGAT TCCTCGTTGTCGTCGTTTTCGCTGGTGTCCCCGTTGAGGCCTTTCCTGCCGAGTTTCCTAACGCAATCGAGGAAGAGCATGGGAGATGACGACATTGATG ATCCTGCGGGGAAGGGGAAACATTGCACGGTGTGCCACACGATGAATGATGAAGAGCTTCTTTGGAGGGCTTCCATGGTTCCTAGGATCTCGTCGTTGCC GTTCAGGAGGGTTCCGAAAGTAGCCTTCATGTTCCTTACCAGAGGGCCGTTGCCTCTGGCGCCCATGTGGGAATTGTTTTTCAGAGGCCATGAGGGACTT TATTCCATTTATGTTCATAACCTTCCCTCGTACAATGATACCGATCCTGTCGACTCCGTCTTCTACGGCCGTCGAATCCCCAGCAAGGAAGTAGGGTGGG GACAACCGTCGATGATCGAAGCAGAGCGCCGGCTGATTGCGAACGCACTCCTTGATTTCGCCAACCAGCGTTTCGTTCTGCTGTCGGAAGCATGCATCCC GATCTTTAACTTCACGACCGTCTATAATTACCTGCTCAAGTCAAGCCACTCATTCGTGGAGGTATACGATCTGCAAGGCCCTGTGGGCAGAGGAAGGTAC AATACGTGGATGAAGCCCCAAATTGATATTGAACAGTGGCGCAAAGGATCTCAGTGGTTCGAGATTGACCGCAAGCTGGCGATTGAGATGGTATCTGACC AGACCTACTTCCCAGTCTTCCAGCGTTATTGCACCGGTTTGTGCTATAGTGACGAGCACTATCTCCCGACCTTTGTCTACATCAGGTTAGCGCGTCGCAA CTCCAATCGCACGCTGACCTGGACAGATTGGTCGAGAGGAGGGCCCCACCCTAGTAGCTTTGGTGACGTCACCCCACGATTGTTGGAACACATGAGGAAC AGCAGTCGTTGTCTTTATAACGGCAGGGAAACCACGTTTTGCTACATGTTTGCGAGAAAATTTAATGCTAACTCGTTGGGCAACTTGTTGAGAGTTGCCC CACGTGTCATGCACTTTTAG
AA sequence Show only first row Show all	>Lus10035828 pacid=23147603 polypeptide=Lus10035828 locus=Lus10035828.g ID=Lus10035828.BGIv1.0 annot-version=v1.0 MIKRKSEQQLRGPQALFKLINGQKRFQSFVIYFLLFGCGLAFGVTVCLYLRDISYYLRLYQFSTHPPTTPPNPESHLLLNSNPSITTSTTGTSSSTKDDD SSLSSFSLVSPLRPFLPSFLTQSRKSMGDDDIDDPAGKGKHCTVCHTMNDEELLWRASMVPRISSLPFRRVPKVAFMFLTRGPLPLAPMWELFFRGHEGL YSIYVHNLPSYNDTDPVDSVFYGRRIPSKEVGWGQPSMIEAERRLIANALLDFANQRFVLLSEACIPIFNFTTVYNYLLKSSHSFVEVYDLQGPVGRGRY NTWMKPQIDIEQWRKGSQWFEIDRKLAIEMVSDQTYFPVFQRYCTGLCYSDEHYLPTFVYIRLARRNSNRTLTWTDWSRGGPHPSSFGDVTPRLLEHMRN SSRCLYNGRETTFCYMFARKFNANSLGNLLRVAPRVMHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035828 [exp]	0	1
AT3G02645			Plant protein of unknown funct...		Lus10015084 [exp]	1.0	0.8858
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006840 [exp]	4.5	0.8040
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	5.3	0.8333
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10035663 [exp]	5.5	0.8227
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10017825 [exp]	8.5	0.7747
AT4G03170	B3		AP2/B3-like transcriptional fa...		Lus10011114 [exp]	8.8	0.7550
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023419 [exp]	9.2	0.7949
AT5G28470			Major facilitator superfamily ...		Lus10024345 [exp]	10.2	0.7867
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	12.7	0.7943
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10042388 [exp]	17.3	0.6980

Compare expression of checked genes

Lus10035828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.