Plant FIBer expression Database

Lus10035829 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G58000 308 / 2e-98 Reticulon family protein (.1)
AT2G20590 150 / 1e-39 Reticulon family protein (.1.2)
AT4G28430 142 / 2e-36 Reticulon family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036611
[exp]
928 / 0 AT5G58000 325 / 4e-105 Reticulon family protein (.1)
Lus10002173
[exp]
110 / 2e-26 AT2G20590 295 / 1e-97 Reticulon family protein (.1.2)
Lus10039890
[exp]
109 / 7e-26 AT2G20590 270 / 1e-87 Reticulon family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G108200
[exp]
419 / 2e-138 AT5G58000 344 / 1e-110 Reticulon family protein (.1)
Potri.006G185700
[exp]
405 / 3e-133 AT5G58000 339 / 7e-109 Reticulon family protein (.1)
Potri.007G137700
[exp]
151 / 7e-40 AT2G20590 330 / 2e-109 Reticulon family protein (.1.2)
Potri.017G014300
[exp]
144 / 2e-37 AT4G28430 283 / 5e-91 Reticulon family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0484 Peroxisome PF02453 Reticulon Reticulon
Representative CDS sequence
>Lus10035829 pacid=23147362 polypeptide=Lus10035829 locus=Lus10035829.g ID=Lus10035829.BGIv1.0 annot-version=v1.0
ATGGATCAGGCGAACGGAAGGAGACGAGTAAGAGCTGGGGTCAACAACAGAGCCGGATCAGTGTGGGAGAGCAGGATGAAGGTCGACGAATTCAAAGGTG
GGATCAAGGTCTTCAATGGTGAAGTACCAACCGATCAACAATCGCCGACTTCACCTGCTGCCAGTGGCGGGGCCAGGAGGCAGACGCTGAGGAACTTAAC
TGCCGGAACTGTGGCGAGCAGCGGGAAGAGGAAGACGTGGAAGTCGGAAAGCTTCGATGGCACAATTCAGATTGCTGGTGTGTCGTCGGTTGATGGAATT
AAGAAGAGCCCAATTCAGGGGAGGAAAGTCAGATCTGATATGGGTATTGGTAGCGACGGAATTGTGAGGAGTCCTGCTCAGATCAGTAAGAAGGGGAGAT
CTGATTGTGGTGGAGGAATTTCTCCTTCGATTGACGTTGGAAAGTCGAGATCCGGCGAATCTGACGTTGGGAAAGAATTAGGTGAATCCGTCTCTGAAAT
TGAGAAGAAGATCAACTCGTCTGAATCGGCGGATACTACTTGTAAGGAGTTTGGCGTTTGTGAAGAAGAGAAGGTAGTTTCTACTACTTTTGATGAAAAT
CATGGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGGGGAAGATGGAAGAGGAAACTGAGAAGAAGACAATTGATATTACGTACACGAATACGG
AAAAGCCAGAAGAGGAAGTAGTAGAACCGATAAATTCTCCAGATCAGGTGAAGCCGAAGAAATTAGTTCATCAGTTTGAAAACAGAGCTCCACTGCCAGT
AGCTTCCACGGTGAGGAAACAACCCCCACCACCGGTGATTAGAAGAGCATCAGTTTACCAAAACTTTAGAAAACCCAGTACTCCAGATCCAGGTCCATCA
AGGAATTACGGAGGAGGAAAACAGAGCAAGCTCCAGAATCTGGTGGATTTGGTGATGTGGAGAGACGTATCGAGATCTGCGTTCGTTTTTGGAATGGGAA
CATTCGTCATTATCTCGTCTTCCTATACTCAGGATCTCAGCATCAGCTTCATTTCTGTGATGTCGTACCTGGGTCTGGTTTACCTCGCTGCAATATTCCT
CTACAGAAGTCTTGTGTATAGAGGGGCTGTGGAGGATGAGGGAGAAGAAGATGGAAAGGGGAGGTATGTGGTTGGTGAAGGAGAGGCAATTGGGTTGGTG
AAGTTAGTTCTGCCATACCTCAATGAATGTCTCCTCAAAATCAAAGCCCTCTTCAATGGCGATCCTTCCACCACTATGAAGTTGGCAGTGCTGATGTTCG
TTCTTGCCAGGTGTGGCGGCTACATCACCATTTGGAAGATGGCCAAATTGGGATTTATCGGAGTTTTCATACTGCCAAAAGTCTGCTCTTCCTACTCCAC
CCAGTTAACCTCCTGCGCCAAATTCTGGATTCAACGATTTCACGACGCGTGGGACAAGTGTGCGCACAAAAAGGCTGTGGCATTGGGCGCCTTCACCTTG
GTTTGGAACTTGTCGTCAATCGTCGCTAGAGTTTGGGCCGTGTTTATGATGTTTGTGGCCGTCCGGTACTATCAACAGTGCATGCAAAGAGACGGTGAAA
ATTGGGCAGATTGTGATGAGGATGAAGATGTTACCACCGCCGGTGATATAGGGGAACACAAACTTGGGGCAAGAAGACAGCCCAATTCCGTTCAAGGAAG
TAATAAACTAAAAAAGAATTACTGA
AA sequence
>Lus10035829 pacid=23147362 polypeptide=Lus10035829 locus=Lus10035829.g ID=Lus10035829.BGIv1.0 annot-version=v1.0
MDQANGRRRVRAGVNNRAGSVWESRMKVDEFKGGIKVFNGEVPTDQQSPTSPAASGGARRQTLRNLTAGTVASSGKRKTWKSESFDGTIQIAGVSSVDGI
KKSPIQGRKVRSDMGIGSDGIVRSPAQISKKGRSDCGGGISPSIDVGKSRSGESDVGKELGESVSEIEKKINSSESADTTCKEFGVCEEEKVVSTTFDEN
HGEEEEEEEEEEEVGKMEEETEKKTIDITYTNTEKPEEEVVEPINSPDQVKPKKLVHQFENRAPLPVASTVRKQPPPPVIRRASVYQNFRKPSTPDPGPS
RNYGGGKQSKLQNLVDLVMWRDVSRSAFVFGMGTFVIISSSYTQDLSISFISVMSYLGLVYLAAIFLYRSLVYRGAVEDEGEEDGKGRYVVGEGEAIGLV
KLVLPYLNECLLKIKALFNGDPSTTMKLAVLMFVLARCGGYITIWKMAKLGFIGVFILPKVCSSYSTQLTSCAKFWIQRFHDAWDKCAHKKAVALGAFTL
VWNLSSIVARVWAVFMMFVAVRYYQQCMQRDGENWADCDEDEDVTTAGDIGEHKLGARRQPNSVQGSNKLKKNY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G58000 Reticulon family protein (.1) Lus10035829
[exp]
0 1
AT4G39220 ATRER1A Rer1 family protein (.1) Lus10011502
[exp]
3.5 0.9043
AT4G33440 Pectin lyase-like superfamily ... Lus10014799
[exp]
4.1 0.8804
AT4G18700 ATWL4, CIPK12, ... SNF1-RELATED PROTEIN KINASE 3.... Lus10007284
[exp]
7.5 0.8780
AT4G08810 SUB1 calcium ion binding (.1) Lus10039175
[exp]
8.8 0.9092
AT1G21830 unknown protein Lus10018177
[exp]
12.5 0.8855
AT1G03900 ABCI18, ATNAP4 ATP-binding cassette I18, non-... Lus10003544
[exp]
12.5 0.8998
AT1G25370 Protein of unknown function (D... Lus10035144
[exp]
13.6 0.8997
AT4G27350 Protein of unknown function (D... Lus10038565
[exp]
13.8 0.9045
AT4G16695 unknown protein Lus10007491
[exp]
17.5 0.8201
AT1G09960 ATSUC4, SUC4, A... sucrose transporter 4 (.1) Lus10007691
[exp]
20.3 0.8501

Lus10035829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.