Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58160 620 / 0 actin binding (.1) AT2G25050 553 / 4e-176 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT3G32400 508 / 1e-167 Actin-binding FH2/DRF autoregulatory protein (.1) AT5G07740 504 / 2e-153 actin binding (.1) AT1G31810 495 / 2e-153 AFH14 Formin Homology 14 (.1) AT5G07770 406 / 1e-125 Actin-binding FH2 protein (.1.2) AT5G07650 377 / 7e-114 Actin-binding FH2 protein (.1) AT5G07780 357 / 6e-111 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G07760 362 / 4e-108 formin homology 2 domain-containing protein / FH2 domain-containing protein (.1) AT1G42980 193 / 9e-55 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036612 [exp] 1200 / 0 AT5G58160 608 / 0.0 actin binding (.1) Lus10007447 [exp] 569 / 0 AT5G58160 604 / 0.0 actin binding (.1) Lus10024450 [exp] 568 / 1e-180 AT5G58160 600 / 0.0 actin binding (.1) Lus10023804 [exp] 511 / 2e-158 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10003956 [exp] 506 / 5e-157 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10015724 [exp] 503 / 2e-156 AT5G07740 723 / 0.0 actin binding (.1) Lus10003482 [exp] 491 / 9e-151 AT5G07740 714 / 0.0 actin binding (.1) Lus10017556 [exp] 284 / 9e-86 AT5G07740 392 / 1e-124 actin binding (.1) Lus10015725 [exp] 204 / 5e-60 AT5G07740 282 / 6e-88 actin binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G108000 [exp] 672 / 0 AT5G58160 600 / 0.0 actin binding (.1) Potri.006G185601 [exp] 672 / 0 AT5G58160 603 / 0.0 actin binding (.1) Potri.006G185501 [exp] 660 / 0 AT5G58160 598 / 0.0 actin binding (.1) Potri.006G263700 [exp] 595 / 0 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.018G019600 [exp] 588 / 0 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.003G103800 [exp] 528 / 3e-164 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.012G067900 [exp] 526 / 2e-163 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 522 / 3e-161 AT5G07740 722 / 0.0 actin binding (.1) Potri.007G054900 [exp] 135 / 7e-32 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.014G174700 [exp] 125 / 1e-28 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF10409 [flax] [poplar] PTEN_C2 C2 domain of PTEN tumour-suppressor protein CL0154 [flax] [poplar] PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10035830 pacid=23147433 polypeptide=Lus10035830 locus=Lus10035830.g ID=Lus10035830.BGIv1.0 annot-version=v1.0 ATGATTACACGTTACAATACGATCACAATCCTGGTCGTATTCGTATACGTAAATCATACAACAAAACGACAAACAAGAAGGAACCACCTGGCTGAGGCAT ACGCCGCCACTTCAGCAACTATGAAAAGAGGTGGCATTTCCACCAAAGCCCTGGAGCTGGAAGCTGATGCAATACAGGGAGAAAGCAAAGCAATCGCCTT TTCGTTACGACGACCCCAATTTCCGGCCCTAATCGAGAAATCTCCTCCTCCTTTTGCTCTCTTCGTTTCAGTGTCGTTAAAACAAGTGAGAAACAAGAAG AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGCAAGTTCTTTCGAGGGTTGTCTCAGATGGCATTGTTTCGCAAACTTTTCTATAGGAAGCCTCCTGATG GCCTGCTTGAGATCTGCGAGCGCGTCTATGTTTTCGACTGCTGTTTTACTATGGATTCATGGCAAGAGAAAGATTACAAAGGATATATAGGTGGAATTGT GAGTCAGCTGAAAGAACACTTCCCTGATGCTTCATATCTAGCATTCAATTTCCGTGAAGGAGAGACACAAAGTCAGATTGCTGATTTTTTGTCGGATTAC GACATGACGATCATGGAGTATCCTCGGCACTATGAAGGTTGCCCTTTGCTCACAATGGAGGTCGTTCACCATTTTCTAAGATCTGGTGAAAGTTGGCTTT CACTTGGGCAACAAAATTTGTTGCTGATGCATTGTGAAAGGGGCGGTTGGCCAGTTCTTGCCTTTATGCTGGCTGCATTGCTGATATACAGGAAGCAATA CGCTGGAGAACAGAAGACATTGGATATGATCTATAGACAGGCGCATTGTGACCTCTTGCAGTTGTGTCCTCTAAACCCGATTCCTTCTCAGCTGCGGTAT CTGCACTATGTTTCGAGAAGAAACGTGGCTACAGAGTGGCCTCCACTTGACAGAGCTCTCAACTTGGACTGTATCATTATGAGATTCATTCCGAATTTTG ATGGTGAGGGTGGGTGCCGTCCTGTATTTCGTATATATGGGCAGGATCCTTTTCTTGCTACAGATAGAACACCAAAGTTCTTGTACTCCACTCCGAAGAA AAACAAAACCTTCAGGGCTTATAAGCAGACAGAATGTGAATTAGTAAAAATCGATATCCGTTGTGCCATCCAAGGTGATGTTGTGCTTGAATGTGTCAGC ATACGGGATGAAATGGAATCTGAGGAAATGATGTTTCGGGTAGTGTTCAATACAGCTTTCATCAGGTCAAACATCTTGATACTCAATCGAGATGAAATTG ACATATTATGGGATGCTAAAGTTCTATTCCCAAAGGAATTCAGAGCAGAGATTATTTTCTCGGAGGTTGATGCCCATGCTACGGTCATTCCGATGGATTT TTCCATCCTGGAGGAGAAAGATGGCCTGCCGATTGAAGCTTTCGCTAAAGTTCATGAAATCTTCAGCAACGTGGACTGGTCAGCTCCGGATGCAGATGCA GCTTTAAATATGCTTCAGCAAATGCAGGACATGGAGTTGGGACACAGTGCAGAACAAAGTCCTCAAAATCCAGAAGCTAGTCCAGGATCCCATAGTGACA GAAAGAAGAGATTGATTTCAGAAAGGTTATTAAGGAACTCACTACTCTCATGGGAAAATACTGAAAGTCTATACTCACCAGAAATATCTCCACGTTTTAG ATTTCTCCGGGATGAGCAGCAAAGTCTTGAAAATAGTCCTAAAGTTGAATCTGATAGCATCAGCCAAGAGACGCTCCAAACACCTGTGGATCTCACCATT AAAGACTTGTTACGAGACCACACATCACTCCAGAGGATCCTAAAGAACTCACTGGCACAAAGTCTTGGGCACCTGGACTCACCAAATTCATTAACGCCTA CTGGGTTGGTTGGTTCTGAGTACCAAGACTCTGAAAGAAACATTAAAGTTCCAAGTCAATCTAATGCTGACACCAAAAATACTTGTGATACATCAACACC TCAACTACAACCTGCTATGGCTTCTGCTGCTGAGAAGCTACTCTTATGTGCACAGTTTTCAGCACCCAACGGTGCTGCCCCCAAGACTCTTTCAACTCCA CAGTTCACTTTTGCTCCTCCTTCACCACCAACGCCTCCATTGACTTCGAAAGAATGTGCTGCTGTTAGAGTCAAACCTCCTCCTCCTCCACCTCCACCTC CTCAATTTCCAGGGCGTGCCACAAGTGTTGTAAATCCCCAACCTGTTGCTCCACCTCCACCACCTCTCCCTCCTCCTCCTCCCCCTCCTGCATTGTCATC AAACAATGTCCAGAGAACCTCTGCTCCACACCCTGCACAGCCCCCTCCTGCCCTTTCTGTACCTTCGTCAGCCTCTCCACCTCCACCTCCATCTCCCCCT ATTGGTTCATCGCATTCTCATCCTTCAATTCTTGCACCTCCACTACCTCCACCTCCTCCTCCTCCGATTCCTTCTCGACACATTCCTACTTCTGTTCCAT CTCCCCCGCCACCGCCTCCTGCTCCTCATTCCTCTGCACCTTCTGCTCCTCCTCCACCACCTCCTCCTCTGCGTTCTTCAGCACCTCCTCCTCCTACCGC TGCTCCACCTCCTCCGCCCCCTTCTGGTAATGGACCTCCTTCCACTGTACCACCATCTCCTGCTCCACCAATGAGTGCTGCCCTTGGGAGCAAGGGACGG TTGTCTCGTACTCTAATGAGCAATCAGAAAAAATTGAAACCATTGCATTGGTTAAAGTTGACAAGAGCCGTACAAGGCAGCTTGTGGGCTGAGACACAAA AATCAGGAGAAGCCTCCAAGGCTCCAGAGATCGATATGTCAGAGCTTGAGAGTCTTTTTGGTGCAGCAGCACCAAATCCAAATCGCGGAGGAAAATCCAA TGCATCGGGTCCACGTGCACCTAAGTCCGAAATAGTTCAGCTGATTGACCACAGGAGAGCGTACAACTGCGAAATCATGCTTTCCAAAGTGAAGATTCCA TTGAACGAGTTAACAGGTTATGTGCTTGCTCTGGAAGATTCAGCTTTAGATATAGATCAAGTAGAAAATCTGATCAAGTTTTGTCCAACAAAAGAAGAGA TGGAACTCCTTAAGGGCTATACTGGAGACAAGGAAAAGTTGGGGAAATGTGAACATTTTTTCTTAGAGTTGATGAAAGTTCCAAGAATAGAAGCAAAGCT CAGAGTTTTTGCCTTTAAAATGCAGTTTCGTTCGCAGGTCTCTGATCTCAGAAATAGCCTACAAACGGTCAACTCTGCTGCAGAACAGGCAAGTTACTGT ATTGGTCTCTTGGCAATCAGGAATTCTGGAAAGTTGAAGAGAATAATGCAGACTATTCTCTCTCTAGGAAATGCTTTGAACCAAGGAACTGCAAGGGGTG CTGCAATTGGTTTTAGGTTGGATAGCCTCTTAAAACTGACCGATACTCGGGCGAAGAATAATAAAATGACCCTCATGCACTATCTTTGCAAGGTGCTTGC TGACAAACTACCGGAGCTTCTAGATTTTTCGAAAGATTTGACCAGTTTGGAATCTGCATCCAGGGTGCAATTGAAGTTCTTGGCTGAGGAAATGCAGGCA ATAAGCAAAGGATTAGAGAAGGTCATGCAAGAGCTATCTTCGTCGGAGAATGATGGTGGCATTTCAGAACACTTCTGCAAGACGCTTAAGGAGTTCCTTC GATTTGCTGAAGCCGAAGTGAGGTCTCTGGCGTCATTGTATTCGGGAGTGGGTAGAAATGTAGATGCATTGATTCTTTACTTTGGCGAAGATCCAGCCCG TTGCCCTTTTGAACAAGTTTGTTCGACGCTGCTAAACTTTGTGAGATTATTCAACAAAGCTCACAACGAGAACTGCAAGCGGCTCGAAATTGAGCTCAAG AAAGCAGCTGAGAATGAAAAGAACAAGAAGGTAGATACGTCCTTGATGCAAACTCCGGTTCAAACCAGTAGTGTCAAGTGA
AA sequence Show only first row Show all	>Lus10035830 pacid=23147433 polypeptide=Lus10035830 locus=Lus10035830.g ID=Lus10035830.BGIv1.0 annot-version=v1.0 MITRYNTITILVVFVYVNHTTKRQTRRNHLAEAYAATSATMKRGGISTKALELEADAIQGESKAIAFSLRRPQFPALIEKSPPPFALFVSVSLKQVRNKK KKKKKKKKKKGKFFRGLSQMALFRKLFYRKPPDGLLEICERVYVFDCCFTMDSWQEKDYKGYIGGIVSQLKEHFPDASYLAFNFREGETQSQIADFLSDY DMTIMEYPRHYEGCPLLTMEVVHHFLRSGESWLSLGQQNLLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYRQAHCDLLQLCPLNPIPSQLRY LHYVSRRNVATEWPPLDRALNLDCIIMRFIPNFDGEGGCRPVFRIYGQDPFLATDRTPKFLYSTPKKNKTFRAYKQTECELVKIDIRCAIQGDVVLECVS IRDEMESEEMMFRVVFNTAFIRSNILILNRDEIDILWDAKVLFPKEFRAEIIFSEVDAHATVIPMDFSILEEKDGLPIEAFAKVHEIFSNVDWSAPDADA ALNMLQQMQDMELGHSAEQSPQNPEASPGSHSDRKKRLISERLLRNSLLSWENTESLYSPEISPRFRFLRDEQQSLENSPKVESDSISQETLQTPVDLTI KDLLRDHTSLQRILKNSLAQSLGHLDSPNSLTPTGLVGSEYQDSERNIKVPSQSNADTKNTCDTSTPQLQPAMASAAEKLLLCAQFSAPNGAAPKTLSTP QFTFAPPSPPTPPLTSKECAAVRVKPPPPPPPPPQFPGRATSVVNPQPVAPPPPPLPPPPPPPALSSNNVQRTSAPHPAQPPPALSVPSSASPPPPPSPP IGSSHSHPSILAPPLPPPPPPPIPSRHIPTSVPSPPPPPPAPHSSAPSAPPPPPPPLRSSAPPPPTAAPPPPPPSGNGPPSTVPPSPAPPMSAALGSKGR LSRTLMSNQKKLKPLHWLKLTRAVQGSLWAETQKSGEASKAPEIDMSELESLFGAAAPNPNRGGKSNASGPRAPKSEIVQLIDHRRAYNCEIMLSKVKIP LNELTGYVLALEDSALDIDQVENLIKFCPTKEEMELLKGYTGDKEKLGKCEHFFLELMKVPRIEAKLRVFAFKMQFRSQVSDLRNSLQTVNSAAEQASYC IGLLAIRNSGKLKRIMQTILSLGNALNQGTARGAAIGFRLDSLLKLTDTRAKNNKMTLMHYLCKVLADKLPELLDFSKDLTSLESASRVQLKFLAEEMQA ISKGLEKVMQELSSSENDGGISEHFCKTLKEFLRFAEAEVRSLASLYSGVGRNVDALILYFGEDPARCPFEQVCSTLLNFVRLFNKAHNENCKRLEIELK KAAENEKNKKVDTSLMQTPVQTSSVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58160			actin binding (.1)		Lus10035830 [exp]	0	1
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10033770 [exp]	2.4	0.9284
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	3.7	0.9461
AT5G58160			actin binding (.1)		Lus10036612 [exp]	6.9	0.9133
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	7.6	0.9441
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10016974 [exp]	10.4	0.9406
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034094 [exp]	12.5	0.9229
AT5G08560			transducin family protein / WD...		Lus10001046 [exp]	16.1	0.9285
AT5G04910			unknown protein		Lus10028878 [exp]	16.4	0.8970
AT5G55860			Plant protein of unknown funct...		Lus10022531 [exp]	23.1	0.9229
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10014763 [exp]	23.4	0.9199

Compare expression of checked genes

Lus10035830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.