Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30950 672 / 0 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1) AT3G11170 106 / 7e-25 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 104 / 3e-24 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT2G29980 102 / 9e-24 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G12120 97 / 5e-22 FAD2 fatty acid desaturase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036613 [exp] 902 / 0 AT4G30950 669 / 0.0 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1) Lus10005039 [exp] 112 / 2e-27 AT5G05580 557 / 0.0 fatty acid desaturase 8 (.1.2) Lus10027809 [exp] 109 / 6e-26 AT5G05580 664 / 0.0 fatty acid desaturase 8 (.1.2) Lus10038321 [exp] 101 / 3e-23 AT3G11170 543 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10036184 [exp] 100 / 9e-23 AT2G29980 551 / 0.0 fatty acid desaturase 3 (.1.2) Lus10018245 [exp] 98 / 4e-22 AT3G11170 549 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10040660 [exp] 96 / 1e-21 AT3G11170 546 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10004176 [exp] 96 / 2e-21 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004175 [exp] 95 / 5e-21 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G185400 [exp] 729 / 0 AT4G30950 690 / 0.0 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1) Potri.018G107700 [exp] 586 / 0 AT4G30950 555 / 0.0 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1) Potri.006G101500 [exp] 119 / 3e-29 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.010G187800 [exp] 115 / 4e-28 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 111 / 1e-26 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 110 / 3e-26 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.001G252900 [exp] 105 / 6e-25 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.006G192000 [exp] 96 / 2e-21 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 89 / 3e-19 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.016G046200 [exp] 88 / 1e-18 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10035831 pacid=23147367 polypeptide=Lus10035831 locus=Lus10035831.g ID=Lus10035831.BGIv1.0 annot-version=v1.0 ATGGCTTGTAGGATTTCTGCTGACTCCGTCTTTCTCCTCTTGGGAGCTAATACGCGGCCAACCAGGAGCCAGAAGCTTGCAGCTCATTCTTCTACCAGCT TCAATGGTTTCACATGGAACCCACTTGTCTTTGCGGAATCTAAACAGAATAAGCGTTTAGTTCATCTGAGGAGGACTAGAAATGTACAAGCTGTGGCTAT TCCGATTGTATCACCAGCTGACGATTCAGAGTACAGGAAACAGCTGGCAGAAAGCTATGGCTTCAAGCAAATTGGAGAAGACCTTCCAGAAGATGTTACA CTAAAGCAAGTCATTGATACCCTCCCAAAAGAGGTGTTTGAGATCGATGATGCAAAAGCATGGAAATCAGTTTTGATTTCAGCAACTTCATATGCATTGG GCCTCTGGATGATTTCCAAGGCTCCTTGGTACCTACTTCCCCTTGCTTGGGCATGGACAGGGACTGCAGTTACTGGGTTCTTTGTCATAGGTCATGATTG CGCTCACAAGTCATTTGCAAGGAACAAAATGGTGGAAGACATTGTGGGAACTCTTGCCTTTCTACCATTAATATATCCGTACGAGCCATGGAGGTTCAAG CATGACAGGCATCATGCAAAGACAAACATGCTGGTAGAAGATACAGCTTGGCTTCCTGTTGATAAAGAAGAGTTCAATTCGTCCCCTATACTGCGCAAGG CCATCGCATATGGATATGGCCCGTTTCGTCCTTGGATGTCTATAGGTCATTGGTTGCTCTTGCACTTCGATCTGAACAGGTTCCGACCAAATGAAATCCA GAGGGTAAAGATAAGTATAGCATGTGTGTTTGGATTCATGGCAATTGGATGGCCCTTGATTATATACAAAGCCGGGATTGTGGGATGGGTCAAGTATTGG TTAATGCCATGGTTGGGATATCACTTCTGGATGAGTACTTTCACAATGGTGCACCATACCGCTCCCCATATTCCATTCAAACAGTCCGAAGAATGGAATG CAGCTCAGGCTCAATTGAACGGAACTGTTCATTGTGATTATCCTCGTTGGATCGAGATTCTCTGTCACAACATCAACGTTCACATCCCCCATCACGTTTC GTCACGGATTCCAAGCTATAACCTCCCTGCAGCTCATAAATCTCTGCAACAGAACTGGGGCAAGTACTTGAACGAAGCTACATGGAACTGGCGGCTAATG AAGACCATAATGACAGTGTGCCATGTCTACGACAAGGAGCAAAACTATGTCGCATTTGACCAGCTCGCCCCTGAAGACTCTCTGCCTATATCATTCCTCA AAAGAGTGATGCCTGATTCTGCCTAA
AA sequence Show only first row Show all	>Lus10035831 pacid=23147367 polypeptide=Lus10035831 locus=Lus10035831.g ID=Lus10035831.BGIv1.0 annot-version=v1.0 MACRISADSVFLLLGANTRPTRSQKLAAHSSTSFNGFTWNPLVFAESKQNKRLVHLRRTRNVQAVAIPIVSPADDSEYRKQLAESYGFKQIGEDLPEDVT LKQVIDTLPKEVFEIDDAKAWKSVLISATSYALGLWMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFARNKMVEDIVGTLAFLPLIYPYEPWRFK HDRHHAKTNMLVEDTAWLPVDKEEFNSSPILRKAIAYGYGPFRPWMSIGHWLLLHFDLNRFRPNEIQRVKISIACVFGFMAIGWPLIIYKAGIVGWVKYW LMPWLGYHFWMSTFTMVHHTAPHIPFKQSEEWNAAQAQLNGTVHCDYPRWIEILCHNINVHIPHHVSSRIPSYNLPAAHKSLQQNWGKYLNEATWNWRLM KTIMTVCHVYDKEQNYVAFDQLAPEDSLPISFLKRVMPDSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	0	1
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10003806 [exp]	1.7	0.8453
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10036857 [exp]	2.2	0.8120
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	2.8	0.8615
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10039044 [exp]	3.5	0.8557
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10007470 [exp]	7.5	0.7783
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	7.7	0.8420
AT4G33480			unknown protein		Lus10003851 [exp]	7.7	0.7978
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10012974 [exp]	9.5	0.7830
AT5G24650			Mitochondrial import inner mem...		Lus10015593 [exp]	11.3	0.7763
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	12.0	0.8064

Compare expression of checked genes

Lus10035831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.