Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23070 199 / 8e-61 Protein of unknown function (DUF300) (.1) AT4G38360 122 / 2e-31 LAZ1 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) AT1G77220 107 / 5e-26 Protein of unknown function (DUF300) (.1) AT5G26740 67 / 3e-12 Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2), Protein of unknown function (DUF300) (.3) AT3G05940 63 / 8e-11 Protein of unknown function (DUF300) (.1) AT1G11200 47 / 1e-05 Protein of unknown function (DUF300) (.1) AT4G21570 47 / 1e-05 Protein of unknown function (DUF300) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036614 [exp] 330 / 2e-113 AT1G23070 184 / 2e-55 Protein of unknown function (DUF300) (.1) Lus10003321 [exp] 159 / 8e-46 AT4G38360 321 / 2e-106 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10022625 [exp] 116 / 3e-31 AT4G38360 296 / 7e-102 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10018920 [exp] 105 / 3e-25 AT1G77220 316 / 5e-104 Protein of unknown function (DUF300) (.1) Lus10028621 [exp] 103 / 1e-24 AT1G77220 316 / 2e-103 Protein of unknown function (DUF300) (.1) Lus10001058 [exp] 62 / 3e-10 AT3G05940 675 / 0.0 Protein of unknown function (DUF300) (.1) Lus10001426 [exp] 62 / 3e-10 AT3G05940 674 / 0.0 Protein of unknown function (DUF300) (.1) Lus10011236 [exp] 48 / 1e-06 AT4G21570 216 / 1e-71 Protein of unknown function (DUF300) (.1) Lus10022626 [exp] 47 / 7e-06 AT4G38360 319 / 2e-108 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G062600 [exp] 212 / 1e-65 AT1G23070 522 / 0.0 Protein of unknown function (DUF300) (.1) Potri.009G165600 [exp] 126 / 2e-32 AT4G38360 717 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.004G204600 [exp] 122 / 4e-31 AT4G38360 713 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.005G188200 [exp] 112 / 2e-27 AT1G77220 756 / 0.0 Protein of unknown function (DUF300) (.1) Potri.002G071400 [exp] 110 / 6e-27 AT1G77220 753 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G000600 [exp] 64 / 2e-11 AT3G05940 622 / 0.0 Protein of unknown function (DUF300) (.1) Potri.011G044200 [exp] 49 / 2e-06 AT1G11200 395 / 1e-139 Protein of unknown function (DUF300) (.1) Potri.004G035900 [exp] 42 / 0.0003 AT1G11200 436 / 1e-155 Protein of unknown function (DUF300) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03619 [flax] [poplar] Solute_trans_a Organic solute transporter Ostalpha
Representative CDS sequence Show only first row Show all	>Lus10035832 pacid=23147681 polypeptide=Lus10035832 locus=Lus10035832.g ID=Lus10035832.BGIv1.0 annot-version=v1.0 ATGAAGGAAGCCGTTAATGATTTGGTTGAAGCGGTGGTGGTCATCAGCGCGGGAAATACATACCGGAATTTGCACCGGCCGGCACTTATTACCGGTGGAT GCTTTGCTCTGACGGCAGTGTTTGTGTCCCTTCTTCTTATCCTCCAACACCTCCGATTTTACACCAACCCATCAGAGCAAAAATGGATTGTGGCTGTTCT CTTCATGGTTCCAGTCTATGCTACTGAGTCCTTGTTGTCTTTGTGGAACCACAAGTTGTCGCTTGCCTGTGATATTCTAAGGAACTGCTACGAGGCTTTC GCATTGTACTCTTTTGGCAGCTATTTAGTCGCATGTCTAGGTGGAGAAGGCAGAGTGTTGGAGATTCTCGAAAGCGATTCGAAAAGACAACTGGTGAAGC CATTGCTAAAGAAAGATGATGAGGAGAAACAAGATCAAGATCAACATCATCATGTAGCGGCATTACGTCGGAGGTCTTCGATGCTCAACTTCTTCTTCCA TCCATGTGTTATCGGCAGTGATTTGTTCGACATTGAAAGATTTGGCCTTGTCCAATATATGGCAATAGCGGCGACTACGCATGCATATGTATTTCCAGCG GAGCCTTACCATTACATTCCTCCTGCTGATGATCACCACCATTCCACAACCAGTGAGAGTAGTATTAGTAGCAAAGAAAAGTTGAAGAAGTTGGGTAGTG GAAGTAGTACTAGTGTTGAGGTTGAGGATGAAGAATGTGTGATGGAGAAGGAAACAACTCGGGTTGAAGCAGCCGGAACAAGTGTTACCGAAAGTGTGCA AGACATAGTTGTTCATGGTGGCCAACATGTGGTGAAGGATGTGGTGTTGACAATCAATCAGGCAATGGGACCTGTAGAGAAAGGAGTCACAAAGATCCAC CAAAAATTTCACCGACGATCAACCAGTTCTGGAGTTGAAGAAGGTGAATCAGAAATTCTACTAGAAAACAGAACACCCACAGCTCTTAAGTAA
AA sequence Show only first row Show all	>Lus10035832 pacid=23147681 polypeptide=Lus10035832 locus=Lus10035832.g ID=Lus10035832.BGIv1.0 annot-version=v1.0 MKEAVNDLVEAVVVISAGNTYRNLHRPALITGGCFALTAVFVSLLLILQHLRFYTNPSEQKWIVAVLFMVPVYATESLLSLWNHKLSLACDILRNCYEAF ALYSFGSYLVACLGGEGRVLEILESDSKRQLVKPLLKKDDEEKQDQDQHHHVAALRRRSSMLNFFFHPCVIGSDLFDIERFGLVQYMAIAATTHAYVFPA EPYHYIPPADDHHHSTTSESSISSKEKLKKLGSGSSTSVEVEDEECVMEKETTRVEAAGTSVTESVQDIVVHGGQHVVKDVVLTINQAMGPVEKGVTKIH QKFHRRSTSSGVEEGESEILLENRTPTALK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23070			Protein of unknown function (D...		Lus10035832 [exp]	0	1
AT3G15420			Transcription factor TFIIIC, t...		Lus10023017 [exp]	14.0	0.7391
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10025118 [exp]	14.0	0.7653
AT3G52240			unknown protein		Lus10034158 [exp]	36.9	0.7159
					Lus10035963 [exp]	46.9	0.6974
AT2G36640		ATECP63	embryonic cell protein 63 (.1)		Lus10035586 [exp]	55.2	0.7119
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002985 [exp]	67.5	0.6987
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10024785 [exp]	79.4	0.6608
					Lus10034684 [exp]	108.1	0.6444
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010172 [exp]	116.0	0.6755
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10030677 [exp]	141.7	0.6191

Compare expression of checked genes

Lus10035832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.