Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58020 360 / 1e-123 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036615 [exp] 649 / 0 AT5G58020 373 / 2e-128 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G186900 [exp] 432 / 1e-151 AT5G58020 259 / 5e-84 unknown protein Potri.018G109800 [exp] 426 / 5e-149 AT5G58020 314 / 2e-105 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04641 [flax] [poplar] Rtf2 Rtf2 RING-finger
Representative CDS sequence Show only first row Show all	>Lus10035833 pacid=23147537 polypeptide=Lus10035833 locus=Lus10035833.g ID=Lus10035833.BGIv1.0 annot-version=v1.0 ATGCACACCAAATCCCACCAGGTATTCCTCAGAACTCCGAATTCCCGCCTCCTCCGAACACTAACATTCGATCCTTCACAAACACTAACCCTCCGCGACC TTAAGCTCTCCCTGGTCCCCGATCATGGAAACCCTAATTCCTTCTACTTCACCCTCGACGGAAAGCTCCTCCACGACGGTATGGCTCTTATTCCCCATAT CCCCGCCCTCTCTACCCTTGTTTTGCGCCACCGCCTCCTCGGAGGCGGAGGCGACGGCGGTGCCACGGGAGCTGAGTCCCGCGACTGCTATCTGAAGATG TACGCGGAGAAGAAGCCAGATAAAGTCGATCCCAACGAGCAGCGGCTGTCGAAGTGGGTGAATTGCGCGCTATCGTACGAGACGTTGCGGCAGCCGTGCG TGATCGATCGATTGGGGAATGTTTTCAACAAGGAAGCCCTGGTTGAGGCTCTGATAGGTAAGAAGTTACCTAAAGCGTTTGGGTATATTAAGGGTTTGAA GGATATGATTGATATTAAGTTGGAGCCTATTTTGGGCGGGGTTGAAACCAACAATGCGTGGTTCCAATGCCCAATTACGGGTCTAGAGTTCAATGGGACT TACAAGTTCTTGGCTTTGAGGAAATGCGGGCATGTGTTGAGTGCCAAGGCGCTGAAGGAAGTGAAATCGTCGGCTTGTTTGGTTTGTTATATGGAATTTG AGGAATGTGATAAGATTGTGATCAATGGTAGTGAAGAGGAGGTGGAGGTTTTGAGGGCAAGGATGGAGGAGGAGAGGGCTAAAGTTAAGGATAAGAAGCA GAAGAAGGTGAAGAATGGAGATGTTGTTGTGGGCAATGGTGTCAATAATGGCAAAGATGGGGTTGAAGTTGAAGCGAAGGAGAAGGAGAAGTCAACAAAG TTGATCGGAAATAAGCATGGAATTGTTGATGCTAAGGGTGTACAAAAGGCTAATGCGAAAGGGGAGAAGATGAATGGGAAGATTGAAAGTAATAAGAGGT TTAAGGCTGTGGATATTGCACCAGCTCATGCCACCAAGGAGGTTTACGCTTCTCTGTTTACTTCTTCGCAGAAGAAAAAGGATTTCAGGGAAACTTACTC TTGTCGATCTCTCCCACTTGGTAGGAACTGA
AA sequence Show only first row Show all	>Lus10035833 pacid=23147537 polypeptide=Lus10035833 locus=Lus10035833.g ID=Lus10035833.BGIv1.0 annot-version=v1.0 MHTKSHQVFLRTPNSRLLRTLTFDPSQTLTLRDLKLSLVPDHGNPNSFYFTLDGKLLHDGMALIPHIPALSTLVLRHRLLGGGGDGGATGAESRDCYLKM YAEKKPDKVDPNEQRLSKWVNCALSYETLRQPCVIDRLGNVFNKEALVEALIGKKLPKAFGYIKGLKDMIDIKLEPILGGVETNNAWFQCPITGLEFNGT YKFLALRKCGHVLSAKALKEVKSSACLVCYMEFEECDKIVINGSEEEVEVLRARMEEERAKVKDKKQKKVKNGDVVVGNGVNNGKDGVEVEAKEKEKSTK LIGNKHGIVDAKGVQKANAKGEKMNGKIESNKRFKAVDIAPAHATKEVYASLFTSSQKKKDFRETYSCRSLPLGRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58020			unknown protein		Lus10035833 [exp]	0	1
AT5G58020			unknown protein		Lus10036615 [exp]	1.0	0.9288
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10025796 [exp]	1.4	0.9097
AT1G03350			BSD domain-containing protein ...		Lus10029636 [exp]	6.2	0.8898
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Lus10027355 [exp]	6.6	0.8601
AT1G65720			unknown protein		Lus10031363 [exp]	10.8	0.8891
AT2G45260			Plant protein of unknown funct...		Lus10030291 [exp]	13.0	0.8578
AT4G34630			unknown protein		Lus10017493 [exp]	14.1	0.8481
AT4G22580			Exostosin family protein (.1)		Lus10004341 [exp]	14.7	0.8832
AT1G11360			Adenine nucleotide alpha hydro...		Lus10037867 [exp]	16.7	0.8673
AT4G17060		FIP2	FRIGIDA interacting protein 2 ...		Lus10001004 [exp]	17.0	0.8365

Compare expression of checked genes

Lus10035833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.