Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28345 659 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28415 658 / 0 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28390 650 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28380 634 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28360 625 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28860 504 / 5e-157 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT2G36910 503 / 2e-156 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G27940 497 / 3e-154 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 482 / 1e-148 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT1G10680 477 / 5e-147 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036617 [exp] 1488 / 0 AT3G28345 764 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10043069 [exp] 889 / 0 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10036616 [exp] 834 / 0 AT3G28345 479 / 6e-159 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 773 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 773 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039458 [exp] 669 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005839 [exp] 664 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10041565 [exp] 650 / 0 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10012959 [exp] 544 / 8e-172 AT3G28345 1325 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G417600 [exp] 962 / 0 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 937 / 0 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G074000 [exp] 670 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 659 / 0 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141300 [exp] 656 / 0 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074101 [exp] 655 / 0 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 650 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141400 [exp] 604 / 0 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G087100 [exp] 581 / 0 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.002G019600 [exp] 525 / 7e-165 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10035834 pacid=23147462 polypeptide=Lus10035834 locus=Lus10035834.g ID=Lus10035834.BGIv1.0 annot-version=v1.0 ATGGGAGAGAAAGGAGGAGGAATGTTCAGATTTGCAGATGGGACAGACAAGCTTCTGATGTTTCTGGGGACATTGGGTTGCATTGGAGATGGGATGCAGT ATGCTCTTACCATGTTTGTTCTTAGCACTGTCATAAATGACTATGGCGACCCCAACGCCACTCTTTCCTATGCTACTGTCAACAAGTATTCTCTTAGGTT GCTCTACGTATCAATTTTTGTCGGAGCTGCTGCTTTCGTTGAAGGAATGTGCTGGACAAGGAGCGCGGAAAGACAGACGTCCAGAATGAGATCACAATAT CTGAAAGCCGTCCTAAGACAAGACGTGGGTTTCTTCGACACTCAGGAAGGTGATGGTGGTTCCACGACGTTCCAAGTCGTTACAACCATATCCAGCGATT CGAATTCCATTCAAGTCGCGATATGTGACAAGATCCCAAACTGCCTTACTTACATGTCAACCTTCTTCTCATGCCTTGTATTCGCATTTGTGCTCTCCTG GAAGCTTGCACTGGCTGCACTCCCATTAACCTTCTTGTTCATAGTCCCGGGCCTTGTATTCGGGAAGCTAATGATGGATGTGATAATGAAGATGATCGCA TCGTACGGAGTGGCTGGAGGGATTGCAGAACAAGCGGTTTCTTCAGTAAGAACTGTCTACTCTTACGTGGCAGAGAAGAAAACCTTGGAAAGTTTCGGCA GTGCGCTTGAGACGACATTGGCGTTGGGTGTGAAGCAAGGTTTTGCAAAGGGATTGTTGATGGGGAGTATGGGAATGATCTATGTTGGATGGGCTTTCCA GGCATGGGTTGGTACCATTCTGGTCTCTGAGAAGAATGAAAAAGGCGGTTCCATTTTTGTAGCTGGAATCAACATCATCATGGGAGGACTGAGCGTTTTG GGTGCCCTTCCGAATCTGACATCCATCACAGAGGCAACAATTGCAGCTACTCGGATTTCGGAGATGATCGATCGAGCTCCCGATATAGATGCTGAAGAAA AGAAGGGGAAAGCACTGTCTCATATAAGAGGAGAGATAGTGTTCAAGGACGTCCATTTCTGCTATCCATCAAGACCTGAGACCCCAGTTTTACAAGCGCT GAACCTCAGGATTCCACCTGGTAAGACAGTGGGTCTTGTTGGTGGGAGTGGTTCGGGGAAGTCCACAACCATTGCTTTGCTCCAGAGGTTTTACGACCCG GTTCAGGGCGATATTCTGTTAGATGGGCACAAGATCAAGAAACTTCAGCTCAAATGGCTGAGGGCTCAAATGGGTCTGGTTAATCAGGAACCTGTCCTGT TCGCAACGTCCATAAAGGAGAACATATTGTTTGGAAAGGAAGGTGCTACGTCCGATGATGTCATCAATGCGGCTCAAGCTGCCAACGCTCATGATTTCAT CGTTAAACTTCCTGATGGATATGAAACCCAGGTGGGACAATTCGGATTCCAAATGTCTGGGGGACAGAAGCAGAGGATTGCCATTGCGAGAGCTCTGATT AGGGAGCCCAAAATCCTGCTGCTTGACGAAGCAACGAGTGCTCTGGATACACAGTCTGAAAGAATAGTACAGTCTGCAATCGACCAAGCATCAAAGGGAA GGACAACTATCACCGTTGCTCATCGCCTCTCCACCATCAGAACAGCAAGCCTTATTGTGGTTTTCCGACAAGGCCAAGTGATCGAAGCCGGAACGCACGA GGAGCTGATGGCAAAGAACAACAACAATGATGGTCAAGACGGAGGAGAGTACTCCAAGATGGTAAGTCTGCAGCAGGCAGCAACTGAAAATGAATCCTAC GATGAGTTCACTCGTAATTTCGAGGGACGAAAGCGTCGCAGCAGCAATAGAAAGAGCCCCGGACCTAGCCCTCGCATTGGAAGTGCAAGGTCAAGTGCAC CTAGCCCCGCACGCAGCATCAGGTCAAGTGCTCCACCGACTCCAAGGTTCAGCCCTGCTAGTCCTGCAAGCCCCTTTAGTCCAGCAATGTCTATGGGAAC TCCATATTCCTATTCGATATATAATCCCGACGACAGCTATGATGATGATGATGATGAATATGATCGCTCAGCTTATCCTGCTCCATCTCAATGGAGGCTG CTGAAAATGAACGCACCTGAATGGGGGACAGCGGTTATCGGATGCTTGGCCTCGATTGGTTCTGGTGCAGTCCAGCCCATCAATGCATATTGCGTTGGAT CTCTTATATCAAACTACTTCGAAACCGATGAAGGTGCTATGAAGCATAAATCCAGGAACCTCTCCCTAGTGTTCCTAGGCATTGCTGCTCTCAACTTCAT TTCTGGCCTAGTGCAGCACTACAGCTTTGCTGTAATGGGAGAAAAGCTTACCAAAAGGGTCCGTGAGAAGCTGCTTGAAAAGCTCATGACTTTCGAGATT GGATGGTTCGATGATGACGAAAACACAAGTGCTGCAATCTGCGCAAGGTTAGCAACCGAAGCAAGCATGGTCCGGTCCTTAGTCGGGGACCGGATTTCAC TGCTGGTTCAAGCCTTCTTCGGATCGATTTTCGCCTACGCACTTGCGCTGGCCCTGTCTTGGAGGCTAGCACTGGTGTTGATAGCGGTGCAGCCGATCGT GGTGGGCGGGTACTACTCCAAGAGCGTGTTGATGAAGAGTCTGGGTGAGAAATCTCAAAAGGCACAGAAGGAAGGAAGCCAGCTAGCAAGTGAAGCGGTG ATTAACCACAGGACTATAACTGCATTCTCTTCTCAGAAGAGGATAGTGGGGCTGTTCAAAGCTACACTCAGAGGCCCTAAAAGGGAGAGTGCAAAGCAGT CATGGCTCTCAGGTTTCGGGCTTTTCAGCGCGCAGTTCTTCAACACTGCGTCTACTGCGTTGGCGTTTTGGTATGGTGGGAGGTTAATGATTGAGGGATC CATAACTCCAGAACGCTTGTTCCAAGCATTCCTGATCCTGCTTTTCTCAGCTTACATAATCGCAGAAGCTGGAAGTATGACGAATGATCTATCAAGAGGT GGGAGTGCTGTTCAGTCAGTGCTTGCAATCCTGGACAGGAAGACTGAAATCGATCCTGACAGCCAGTATGGATCGTCAGAAAAGAACAGAAGGGAGATAA GAGGCAAAGTTGAGATGAAAGAAGTCTACTTTGGGTACCCAAGCAGGCCGGATCAAATGATATTCAAAGGACTAAACCTGAAGATGGATGCAGGGAAGAC GGTCGCATTGGTAGGGCCAAGTGGGTCGGGGAAATCGACAGTGCTTTCGTTGATAGAGAGGTTCTACGATCCGTCGAAAGGAGCAGTGTTTATCGACGGA CAAGACGTGAGGAACTACAACCTGAGATGGCTGAGAAGTCACATTGCTTTGGTGAGTCAAGAGCCGACTTTGTTTGCTGGAACCATAGCTGAGAACATAG GATACGGTAATGAAAATGCTAGAGAATCGGAGATCAAAAAGGCCGCACAGCTAGCAAATGCGCATGAATTCATCAGCGGGATGAAAGAAGGGTACGACAC ATACTGTGGGGAGAGAGGGGTGCAGCTATCAGGAGGGCAGAAACAGAGGGTAGCGATTGCGAGGGCGATACTGAAGAACCCGGCAATCCTTCTGTTGGAC GAAGCGACGAGCGCACTGGACAGTGTGTCGGAGAAATTGGTACAGGAAGCACTGGAGAAGATGATGGTTGGAAGGACAAGCGTTGTGGTTGCTCACAGGC TGTCCACTGTTCAAAAATCAGATTCGATAGCTGTGATTAAGAATGGACAAGTTGCGGAGAAAGGGTCGCATAATGAACTGATTGCTTTGGGTAAGAGAGG TGTTTATTACTCTCTCATCAAACCACAAGCTGGAACTGGAAGCAGCACATCTCCTTTCCGCTGA
AA sequence Show only first row Show all	>Lus10035834 pacid=23147462 polypeptide=Lus10035834 locus=Lus10035834.g ID=Lus10035834.BGIv1.0 annot-version=v1.0 MGEKGGGMFRFADGTDKLLMFLGTLGCIGDGMQYALTMFVLSTVINDYGDPNATLSYATVNKYSLRLLYVSIFVGAAAFVEGMCWTRSAERQTSRMRSQY LKAVLRQDVGFFDTQEGDGGSTTFQVVTTISSDSNSIQVAICDKIPNCLTYMSTFFSCLVFAFVLSWKLALAALPLTFLFIVPGLVFGKLMMDVIMKMIA SYGVAGGIAEQAVSSVRTVYSYVAEKKTLESFGSALETTLALGVKQGFAKGLLMGSMGMIYVGWAFQAWVGTILVSEKNEKGGSIFVAGINIIMGGLSVL GALPNLTSITEATIAATRISEMIDRAPDIDAEEKKGKALSHIRGEIVFKDVHFCYPSRPETPVLQALNLRIPPGKTVGLVGGSGSGKSTTIALLQRFYDP VQGDILLDGHKIKKLQLKWLRAQMGLVNQEPVLFATSIKENILFGKEGATSDDVINAAQAANAHDFIVKLPDGYETQVGQFGFQMSGGQKQRIAIARALI REPKILLLDEATSALDTQSERIVQSAIDQASKGRTTITVAHRLSTIRTASLIVVFRQGQVIEAGTHEELMAKNNNNDGQDGGEYSKMVSLQQAATENESY DEFTRNFEGRKRRSSNRKSPGPSPRIGSARSSAPSPARSIRSSAPPTPRFSPASPASPFSPAMSMGTPYSYSIYNPDDSYDDDDDEYDRSAYPAPSQWRL LKMNAPEWGTAVIGCLASIGSGAVQPINAYCVGSLISNYFETDEGAMKHKSRNLSLVFLGIAALNFISGLVQHYSFAVMGEKLTKRVREKLLEKLMTFEI GWFDDDENTSAAICARLATEASMVRSLVGDRISLLVQAFFGSIFAYALALALSWRLALVLIAVQPIVVGGYYSKSVLMKSLGEKSQKAQKEGSQLASEAV INHRTITAFSSQKRIVGLFKATLRGPKRESAKQSWLSGFGLFSAQFFNTASTALAFWYGGRLMIEGSITPERLFQAFLILLFSAYIIAEAGSMTNDLSRG GSAVQSVLAILDRKTEIDPDSQYGSSEKNRREIRGKVEMKEVYFGYPSRPDQMIFKGLNLKMDAGKTVALVGPSGSGKSTVLSLIERFYDPSKGAVFIDG QDVRNYNLRWLRSHIALVSQEPTLFAGTIAENIGYGNENARESEIKKAAQLANAHEFISGMKEGYDTYCGERGVQLSGGQKQRVAIARAILKNPAILLLD EATSALDSVSEKLVQEALEKMMVGRTSVVVAHRLSTVQKSDSIAVIKNGQVAEKGSHNELIALGKRGVYYSLIKPQAGTGSSTSPFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10035834 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10014107 [exp]	9.4	0.5814
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10037756 [exp]	11.5	0.5518
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10042999 [exp]	14.0	0.5400
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10042436 [exp]	16.6	0.5638
AT2G15220			Plant basic secretory protein ...		Lus10026582 [exp]	18.4	0.5246
AT1G17930			Aminotransferase-like, plant m...		Lus10023395 [exp]	20.1	0.5269
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10005599 [exp]	23.8	0.5258
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032214 [exp]	29.9	0.5403
					Lus10039384 [exp]	31.5	0.5026
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	37.8	0.5138

Compare expression of checked genes

Lus10035834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.