Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54730 503 / 2e-167 ATATG18F ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) AT1G03380 444 / 1e-142 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1) AT1G54710 417 / 9e-133 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1) AT5G05150 53 / 5e-07 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT2G40810 52 / 1e-06 ATATG18C homolog of yeast autophagy 18C (.1.2) AT3G56440 51 / 2e-06 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT3G62770 50 / 3e-06 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036618 [exp] 1452 / 0 AT5G54730 511 / 3e-170 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10018960 [exp] 474 / 1e-153 AT1G54710 947 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10000925 [exp] 446 / 1e-142 AT1G54710 878 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10033817 [exp] 426 / 1e-138 AT1G54710 866 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10002257 [exp] 431 / 5e-138 AT1G54710 897 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10029900 [exp] 57 / 4e-08 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10031500 [exp] 54 / 5e-07 AT3G62770 493 / 1e-173 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10033818 [exp] 52 / 7e-07 AT1G54710 83 / 2e-17 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10004501 [exp] 52 / 1e-06 AT3G62770 493 / 5e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G417000 [exp] 881 / 0 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.011G132700 [exp] 876 / 0 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.005G040300 [exp] 477 / 5e-155 AT1G54710 861 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.013G028200 [exp] 470 / 2e-152 AT1G54710 867 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.019G062800 [exp] 52 / 8e-07 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.014G132300 [exp] 52 / 2e-06 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.002G207865 [exp] 47 / 4e-05 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.005G026600 [exp] 43 / 0.0008 AT3G62770 491 / 7e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.013G018400 [exp] 43 / 0.0009 AT3G62770 496 / 6e-176 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF12490 [flax] [poplar] BCAS3 Breast carcinoma amplified sequence 3
Representative CDS sequence Show only first row Show all	>Lus10035835 pacid=23147660 polypeptide=Lus10035835 locus=Lus10035835.g ID=Lus10035835.BGIv1.0 annot-version=v1.0 ATGAGGAACGGTACTGGCGATCGGCCACAGCAGCAGAAGCATACGCAGGGACGAGGTGATGGATTTCTACCCAACTCCTTCCGTTCGATTTCCAGCTACT TGAAGATCGTTTCATCAGGAGCTTCCACGGTGGCCAAGTCTGCTGCCTCGGTTGCCCACTCACTCGTCGTCGAAAGAGAAGATGATCCCAAGTACTATGA TCAGGTATACTGGGGTGGGTTTGACAAGTTAGAAACTGAGGGAAACATTACTCGGCAGGTTCTGCTGCTAGGCTGTCGTTCTGGTTTTCAGGTTTGGGAT GTTGAGGAAGCAGATAATGTTCACAACCTAGTTTCCAGACAAGATGGCCCCGTGGCATCCTTGCAAATGCTCCCTAAACCCATTTCTTCAAAGAGAGGAG GAGATAAATTTGCTAATTGCAGGCCAATGGTTGTTGTCTTCTCAGACGGTTTCCTTGCTGAAGCTTGTAACATGCAGCATAGACCAGATCTTTCCTCCGA TGGTACTCTTCCCAATTACCCAGAAGTGAGCAATGGGAATTTTGTGCCCACTACTGCTCTTTTTTATTCCTTGAAATCCCATTCTTACGTACATGTGCTC AAGTTCAGATCGGCAATTTATTCTGTAAGGTGCAGCTCCCGGGTTGTTGCTATTTCTCAAGCAGCTCAGATACACTGTTTTGATTCCACCACTCTTGAGA AGGAATACACTATCCTCACAAACCCGATAGTCCAAGGGCTCCAGAATGCTGTTGGTATAGGTTACGGTCCTCTTGCAGTCGGTCCGAGGTGGTTGGCATA TAGTGGAAGCCCAGTTGTACGATCTAATACTGGCCGTGTAAGCCCACAGCACCTTGCACCATCTATGAGCAGCCTTTCTGGTTTTAATTCAAACAGATAT CCAGTGGCACAATATGCAAAAGAATCTAGCAAGCAACTTGCTTCTGGAATTGTCACCTTAGGTGACAAGGGCTACAAGAAGTTGACCAGGTATTGTTCAG AGCTCATACCAGATTCCCATGGCTTGAAAGAGAACGGAGTTCTTAATGGCCACTTTCCCGATGCTGATAAAATAGGAATGGTTATCATCAGAGATATTAT TAGTAAGCATGTTGTCACCCAGTTTAGGGCGCACAAGAGTCCTATTTCAGCCTTGTGCTTTGATCCTAGCGGGACTCTTTTGGTCACTGCTTCTGTACAA GGCCATAACATTAACGTATTCAAAATAATGCCTGGATACACTGTGCGCACTTCAGTAGGCGATTCTGATGGATCTTATGTTCACCTTTACAAGTTGCAAC GTGGTTTTACAAATGCTGTTATCCAAGATATCAGTTTCAGTGATGACAGTCGGTGGATCATGATAAGTTCATCAAGGGGAACAAGCCATTTATTTGCGAT TAATCCTTTTGGAGGCTCTGTGAAGTTCGACTCTAATTACGATGGTTATGCTAGAAAGAACAATGGAGAAGGCATGATGATCAAATCTGCTGTCCGCTGG CCACCGAGTTTAGGGTTCCAAATGTGCAGTGACCTCAGTGCATCTGGGCCTCCTGTTACTCTATCTGCTATTAGCAGGATTAGAAATGGAAGTAATGGTT GGAAAGGCACTGTAAGTGGGGCTGCTTCAGTTGCAACAGGCAGACTCGGTTCTGTTCCTGGCCCGATTGCTTCTTCTTTCCACAACTGCAAGAGAAATGG CACTTCATGTGAAACTGGGAACTCTACAAAGAAAAAATACCATCTCCTCGTTTTCTCTGCCTTTGGGTGTATGATACAGTATACAATGCAAATATCAGCT GCTGCGGATTCTTCACCTGTTCCTGTGTCAAACACTGACTATGACATCATTGAAGAAAGTGATGGAAGCTTAGTGGTTGATGCAATTCAGAAATGGAATA TATGCGAGAAACAACACCAAAAAGAGCGTCAAGATAACGTCGACATATATGGTGATAATGGTCATTTAGGAATCAGTAAGATATATCCAGAATGCTCCAA AAAATCAAATAGTATTCATCCGGAATGTGATGGTCGGGACTTAAATGCAAAGAGCAGCAGTGAAGACAAATATCCTCTGTATATTTCAGAAGCTGAACTG CAGACGTATCAATCTGGTGAACCATTGTGGGAAAAGGCTGAGATCTATTTCCAATCAATGATTAGACAAGCAACAATGATGGATGAAGAAAATGGAAGCC AAGGTGAGTTAAAGCTGGAAAGTATTCCAGCGTGTCTCATTGCAGCAAGGCGTAAGGACCTACTTCCAGTTTTCGACCGGGTCTATGCTCCAGCATTACT TGGAAGGCGAGTGGAGACAAGCATCTGTGGTTCACTGTTCCTTGTGACTTTGATTTTCCTACATTTCTAA
AA sequence Show only first row Show all	>Lus10035835 pacid=23147660 polypeptide=Lus10035835 locus=Lus10035835.g ID=Lus10035835.BGIv1.0 annot-version=v1.0 MRNGTGDRPQQQKHTQGRGDGFLPNSFRSISSYLKIVSSGASTVAKSAASVAHSLVVEREDDPKYYDQVYWGGFDKLETEGNITRQVLLLGCRSGFQVWD VEEADNVHNLVSRQDGPVASLQMLPKPISSKRGGDKFANCRPMVVVFSDGFLAEACNMQHRPDLSSDGTLPNYPEVSNGNFVPTTALFYSLKSHSYVHVL KFRSAIYSVRCSSRVVAISQAAQIHCFDSTTLEKEYTILTNPIVQGLQNAVGIGYGPLAVGPRWLAYSGSPVVRSNTGRVSPQHLAPSMSSLSGFNSNRY PVAQYAKESSKQLASGIVTLGDKGYKKLTRYCSELIPDSHGLKENGVLNGHFPDADKIGMVIIRDIISKHVVTQFRAHKSPISALCFDPSGTLLVTASVQ GHNINVFKIMPGYTVRTSVGDSDGSYVHLYKLQRGFTNAVIQDISFSDDSRWIMISSSRGTSHLFAINPFGGSVKFDSNYDGYARKNNGEGMMIKSAVRW PPSLGFQMCSDLSASGPPVTLSAISRIRNGSNGWKGTVSGAASVATGRLGSVPGPIASSFHNCKRNGTSCETGNSTKKKYHLLVFSAFGCMIQYTMQISA AADSSPVPVSNTDYDIIEESDGSLVVDAIQKWNICEKQHQKERQDNVDIYGDNGHLGISKIYPECSKKSNSIHPECDGRDLNAKSSSEDKYPLYISEAEL QTYQSGEPLWEKAEIYFQSMIRQATMMDEENGSQGELKLESIPACLIAARRKDLLPVFDRVYAPALLGRRVETSICGSLFLVTLIFLHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	0	1
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	1.0	0.9682
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	1.4	0.9665
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026142 [exp]	2.8	0.9462
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10018963 [exp]	3.0	0.9330
AT2G31130			unknown protein		Lus10017672 [exp]	3.2	0.9410
AT4G34280			transducin family protein / WD...		Lus10026603 [exp]	4.5	0.9311
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10001973 [exp]	4.6	0.9365
AT3G20250		APUM5	pumilio 5 (.1)		Lus10033353 [exp]	4.9	0.9472
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10026356 [exp]	4.9	0.9338
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015886 [exp]	7.7	0.9237

Compare expression of checked genes

Lus10035835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.