Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54690 805 / 0 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) AT3G01040 552 / 0 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G15470 547 / 0 GAUT14 galacturonosyltransferase 14 (.1) AT3G58790 366 / 5e-121 GAUT15 galacturonosyltransferase 15 (.1) AT5G47780 328 / 2e-105 GAUT4 galacturonosyltransferase 4 (.1) AT3G25140 324 / 2e-104 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G61130 319 / 3e-101 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT1G18580 315 / 4e-101 GAUT11 galacturonosyltransferase 11 (.1) AT3G02350 311 / 2e-99 GAUT9 galacturonosyltransferase 9 (.1) AT4G38270 309 / 2e-97 GAUT3 galacturonosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036619 [exp] 698 / 0 AT5G54690 636 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10032990 [exp] 524 / 0 AT3G01040 955 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10013189 [exp] 508 / 2e-176 AT5G15470 952 / 0.0 galacturonosyltransferase 14 (.1) Lus10015379 [exp] 499 / 6e-169 AT3G01040 833 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10030703 [exp] 485 / 2e-167 AT3G01040 926 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10038739 [exp] 327 / 2e-104 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10003045 [exp] 323 / 9e-104 AT3G02350 827 / 0.0 galacturonosyltransferase 9 (.1) Lus10011834 [exp] 318 / 5e-102 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10018554 [exp] 315 / 5e-101 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G416800 [exp] 829 / 0 AT5G54690 851 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.011G132600 [exp] 796 / 0 AT5G54690 871 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.004G124500 [exp] 550 / 0 AT5G15470 873 / 0.0 galacturonosyltransferase 14 (.1) Potri.017G090800 [exp] 535 / 0 AT5G15470 882 / 0.0 galacturonosyltransferase 14 (.1) Potri.014G142000 [exp] 375 / 2e-124 AT3G58790 663 / 0.0 galacturonosyltransferase 15 (.1) Potri.016G001700 [exp] 334 / 5e-107 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G246500 [exp] 329 / 2e-106 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.006G001100 [exp] 327 / 5e-105 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.004G111000 [exp] 321 / 4e-103 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.008G010000 [exp] 322 / 4e-102 AT3G25140 671 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10035836 pacid=23147595 polypeptide=Lus10035836 locus=Lus10035836.g ID=Lus10035836.BGIv1.0 annot-version=v1.0 ATGCAGCTGCACATATCTCCAAGCTTGAGGCATGTTACTGTTCTTCCTGGGAAAGGCGTGAGAGAGCTCATTCAAGTTAAAGTTGGAGGCAAGAAGGTCT CGTATCGAATGATCTTGTATTCTCTTCTCTTCTTCACATTCCTCCTACGATTCGTCTTCGTTCTCTCTACCGTTGACTCCATTGATGGCGAAACCAGATG CTCCTCTCTTGGTTGCTTGGGGAAAAAATTGGGGCCAAGATTATTGGGAAGAAGGATGGACCAATCTGTTCCTGAGGTAATGTACACAGTACTGGAACAA CCCACTGACAAGGATGAACTAAACAAAAGGACAGACATCCCTCAAACTCTGGAGGAGTTCATGGTCCAAGTCAAGGATTCAAGACTAGATGCCAGAACTT TCGCTCTCAAGCTTAGAGAAATGGTTACACTGATGGAAGAGAGGACTAGAACAGCTAAAATCCAGGAGTATCTGTACAGACATGTGGCATCAAGTAGCAT ACCGAAACAGCTCCATTGCCTAGCCTTGAGGCTGGCCAACGAGCACTCGACGAATGCAGGGGCCAGGCTTCAGCTACCATCTGCTGAGCTTGTTCCTGCT TTGGTTGACAATTCTTACTATCATTTCGTGCTGGCTTCGGACAATGTTCTTGCAGCTGCTGTGGTTGCTGCATCAGTTGTTCACAACTCGTTGAGACCAC ACAAGTGTGTGATCCACATAATTACAGACAGGAAGACATACTACCCTATGCAAGCTTGGTTCTCCTTGCACCCTCTCTCCCCTGCAATTGTTGAGGTCAA GGCATTGCACCATTTTGATTGGTTCTCAAAGGGGAAAGTTCCTGTTCTTGAGGCAATGGAGAAAGACCAGAAGGTTAGATCACAGTTCAGAGGTGGATCC TCTGCAATTGTCGCCAACAACACTGAAAAACCTAAAGTCATTGCAGCCAAGCTCCAAGCCCTTAGTCCCAAGTATAACTCCATGATGAACCATATTAGGA TCCACCTCCCCGAGCTTTTCCCGAGCTTGAACAAGGTGGTGTTCCTAGATGATGACATCGTGGTACAGGCAGATCTTTCGCCACTTTGGGACATCGATCT AGACGGAAAAGTGAATGGAGCTGTGGAAACATGCAGAGGAAATGACAAATATGTGATGTCAAAGCGGTTGAAGAACTACTTGAACTTCTCACATCCTCTG ATATCTCAGCATTTCGATCCTGAAGATTGTGCATGGGCATACGGGATGAACGTTTTCGATCTCAACGCTTGGAGGAGAACCAACATAAGTAACATTTACC ATCACTGGCTCAAACAGAACCTGAAATCAGACCTGAGCCTGTGGCAGCTGGGAACATTACCACCAGGGCTAATTGCGTTCCATGGGTATGTGAAAACCAT TGATCCATTCTGGCACATGCTAGGGCTAGGGTACCAAGACAATAGTAGTTATGAGGAGGCAGAGAGTGCTGCTGTGGTCCATTTCAATGGAAGAGCAAAG CCATGGTTAGACATAGCTTTCCCTCACCTTAGGCCATTGTGGACCAAATACGTTGACTTCAATGACAAATTCATCAAGAGTTGTCACATTAGAGCAGGTT AA
AA sequence Show only first row Show all	>Lus10035836 pacid=23147595 polypeptide=Lus10035836 locus=Lus10035836.g ID=Lus10035836.BGIv1.0 annot-version=v1.0 MQLHISPSLRHVTVLPGKGVRELIQVKVGGKKVSYRMILYSLLFFTFLLRFVFVLSTVDSIDGETRCSSLGCLGKKLGPRLLGRRMDQSVPEVMYTVLEQ PTDKDELNKRTDIPQTLEEFMVQVKDSRLDARTFALKLREMVTLMEERTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAGARLQLPSAELVPA LVDNSYYHFVLASDNVLAAAVVAASVVHNSLRPHKCVIHIITDRKTYYPMQAWFSLHPLSPAIVEVKALHHFDWFSKGKVPVLEAMEKDQKVRSQFRGGS SAIVANNTEKPKVIAAKLQALSPKYNSMMNHIRIHLPELFPSLNKVVFLDDDIVVQADLSPLWDIDLDGKVNGAVETCRGNDKYVMSKRLKNYLNFSHPL ISQHFDPEDCAWAYGMNVFDLNAWRRTNISNIYHHWLKQNLKSDLSLWQLGTLPPGLIAFHGYVKTIDPFWHMLGLGYQDNSSYEEAESAAVVHFNGRAK PWLDIAFPHLRPLWTKYVDFNDKFIKSCHIRAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10035836 [exp]	0	1
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	1.0	0.9937
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10019479 [exp]	2.0	0.9908
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10018637 [exp]	2.6	0.9857
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10026487 [exp]	4.2	0.9877
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10023173 [exp]	4.7	0.9798
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	4.9	0.9859
AT2G28315			Nucleotide/sugar transporter f...		Lus10041314 [exp]	4.9	0.9875
AT2G28315			Nucleotide/sugar transporter f...		Lus10041315 [exp]	5.0	0.9870
AT1G22030			unknown protein		Lus10019943 [exp]	5.2	0.9827
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017863 [exp]	5.7	0.9838

Compare expression of checked genes

Lus10035836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.