Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15380 561 / 0 Plasma-membrane choline transporter family protein (.1) AT4G38640 56 / 5e-08 Plasma-membrane choline transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036620 [exp] 694 / 0 AT3G15380 1154 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10025051 [exp] 65 / 9e-11 AT4G38640 674 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10034492 [exp] 49 / 1e-05 AT4G38640 645 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10034295 [exp] 45 / 0.0002 AT1G25500 625 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Lus10041476 [exp] 44 / 0.0002 AT1G25500 624 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121100 [exp] 612 / 0 AT3G15380 1135 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.009G132900 [exp] 63 / 3e-10 AT4G38640 631 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.004G173600 [exp] 56 / 6e-08 AT4G38640 620 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.010G128100 [exp] 52 / 6e-07 AT1G25500 581 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.008G118200 [exp] 52 / 9e-07 AT1G25500 588 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04515 [flax] [poplar] Choline_transpo Plasma-membrane choline transporter
Representative CDS sequence Show only first row Show all	>Lus10035837 pacid=23147468 polypeptide=Lus10035837 locus=Lus10035837.g ID=Lus10035837.BGIv1.0 annot-version=v1.0 ATGAGCCGGCCACTTGGGGCGGTGATAGGGAGGTACCCATCGAGTGACGGCAGCACTCGGATTGATGGCATCATTAGGCGTAGCAGGAAGTGCAGGGATG TCGCATTTCTGGTTGTGTTCATCGCCTTTTGGGTTGCTATGATTGTCAACTCCAGCTTTGGATTCAACCAAGGAAATCCATTAAGACTTACTTATGGACT GGACTACAAAGGAAATGTTTGTGGTGACAAACATGCACATCCTAATCTGCGTGAATTGGAGCTTACATACTGGGTCAATCCCAATCAGGTCTATCTTAGT GGTTCTAAGGACAGCCAATTTAAGTTGGCCAATGCTAGGAGTATATGCTTGTTGGACTGTCCAAGACCCACAGATGATGGCTTGAATTGGGTCTGTGATT ACCCAGAGGGTGATATTCGTATATCAATGGATGATTGGATTGACAGGAATTATGATTATTACGAGTTCCTTACTCCTGAAATGAGGAACACATCACTCCA ACTCCAGGGTCCTTGTTACCCTGTCATTTTTCCAAGCGTGAATGTATACTGGAGGTGTGAATTTGTTGCTCATGCGTCAAACGCATCTTTGCGACATTGG CAGCAAATGCTTGGAGTGAATATCAATGAGGATATTATAATTGACAAAACTATTCACAAGTCAATCAATGCTCGTTCTTCTGTGCTTAAGGTAGCTGCAA AGGTCATTGGAGAAGTTCAGGCACTAATAATTTTCCCAGTCATACCGTACGTTATGCTTGCAATATTCTACATGTTCTGGTTTTCAGCTGCTTTGCATCT CTTTAGTTCTGGGCAGATTGTCCAGAATGATTGCAGCTCTGATTGCTGCGCCTATGATCTTTTATCAAAACGGGTGAACTGTGATCGGTGTTGTGGTTAT GGCATTCGTTATACTCCTCATATTGCTATTGCGATCTTTTTCCACCTATTTGGATGTTTCTGGGCCACTCAATGTTTCATAGCGTCTTCTGCAACTGTCA TTGCTGGCTCAGTTGCATCATATTATTGGGCTCGTGGTGAGACATCGTCAGAGATTCCATTTCTTCCAGTTTTTGGCTCCATGAAAAGGCTTATACGCTA CAGCCTTGGGTCTGTTGCCCTAGGTTCACTGGTGGTCTCATTTGTGGAATCAATACGCTTCATCCTGGAATCAATTCGTCGCAAATTGAAAGTTGCTAAT ACTATGCCGGACAGCTGGGTTGGGAAGATGATGCACCATTTCTTCAGATATTGTCTCAAGTGCATCGAATGGACCGTAAAATCGGTGAACCGCAATGCAT ATATAATGATAGCTATTACAGGTAAGAGCTTCTGCAGGTCATCTGCTATGGCAACAGAATTGATCATGAGCAACATACTGAGGATAGGGAAAGTGAATGT GGTTGGAGACATAATTTTGTTTCTGGGAAAGTTGTGCGTGAGCCTGTCAAGTGCAGTGTTTGCTTTCCTCATGTTGGACACTCACAAGTTTAAATCTTCG CACAACAAGATTTCATCCCCACTCTTGCCTGTGGTGGTATGCTGGGCTCTTGGGTACGTGGTGGCGACTCTATTCTTTGCGGTGGTGGAGATGTCGATCG ATACAATAATACTGTCATTCTGTCAGGATTCGGAGGAGCACCAGGGGACGGCTCAGTATGCTCCTCCTCTTCTCATGGAGACTCTAAATGATCAGAGTGA GACGCAGAGACTAACTCAATGA
AA sequence Show only first row Show all	>Lus10035837 pacid=23147468 polypeptide=Lus10035837 locus=Lus10035837.g ID=Lus10035837.BGIv1.0 annot-version=v1.0 MSRPLGAVIGRYPSSDGSTRIDGIIRRSRKCRDVAFLVVFIAFWVAMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDKHAHPNLRELELTYWVNPNQVYLS GSKDSQFKLANARSICLLDCPRPTDDGLNWVCDYPEGDIRISMDDWIDRNYDYYEFLTPEMRNTSLQLQGPCYPVIFPSVNVYWRCEFVAHASNASLRHW QQMLGVNINEDIIIDKTIHKSINARSSVLKVAAKVIGEVQALIIFPVIPYVMLAIFYMFWFSAALHLFSSGQIVQNDCSSDCCAYDLLSKRVNCDRCCGY GIRYTPHIAIAIFFHLFGCFWATQCFIASSATVIAGSVASYYWARGETSSEIPFLPVFGSMKRLIRYSLGSVALGSLVVSFVESIRFILESIRRKLKVAN TMPDSWVGKMMHHFFRYCLKCIEWTVKSVNRNAYIMIAITGKSFCRSSAMATELIMSNILRIGKVNVVGDIILFLGKLCVSLSSAVFAFLMLDTHKFKSS HNKISSPLLPVVVCWALGYVVATLFFAVVEMSIDTIILSFCQDSEEHQGTAQYAPPLLMETLNDQSETQRLTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15380			Plasma-membrane choline transp...		Lus10035837 [exp]	0	1
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Lus10042405 [exp]	8.5	0.8840
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	11.8	0.9016
AT3G49810			ARM repeat superfamily protein...		Lus10010598 [exp]	14.2	0.8578
AT4G39200			Ribosomal protein S25 family p...		Lus10040436 [exp]	17.0	0.9001
AT1G66250			O-Glycosyl hydrolases family 1...		Lus10004044 [exp]	18.3	0.8948
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	18.3	0.8993
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10002625 [exp]	22.2	0.8920
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10040546 [exp]	24.8	0.8967
AT1G36280			L-Aspartase-like family protei...		Lus10028260 [exp]	25.9	0.8948
AT4G02930			GTP binding Elongation factor ...		Lus10027995 [exp]	30.1	0.8983

Compare expression of checked genes

Lus10035837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.