Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54670 1076 / 0 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) AT4G27180 1040 / 0 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT4G21270 901 / 0 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) AT4G05190 889 / 0 ATK5 kinesin 5 (.1) AT5G27550 312 / 1e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22610 317 / 1e-93 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G72250 317 / 3e-93 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G73860 285 / 8e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G47500 284 / 1e-82 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 283 / 4e-82 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036621 [exp] 1640 / 0 AT5G54670 1075 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Lus10018384 [exp] 863 / 0 AT4G21270 989 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10007629 [exp] 850 / 0 AT4G21270 975 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10005582 [exp] 311 / 2e-91 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 311 / 2e-91 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10004487 [exp] 297 / 2e-88 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035954 [exp] 297 / 8e-87 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10029914 [exp] 290 / 7e-86 AT5G27550 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025708 [exp] 283 / 6e-82 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G416300 [exp] 1171 / 0 AT5G54670 1090 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.011G131900 [exp] 1165 / 0 AT5G54670 1058 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.011G031200 [exp] 923 / 0 AT4G21270 1109 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.004G031600 [exp] 895 / 0 AT4G21270 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.011G140000 [exp] 316 / 5e-93 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.013G020700 [exp] 307 / 2e-92 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G436200 [exp] 310 / 7e-91 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.005G030271 [exp] 295 / 6e-88 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G110600 [exp] 293 / 1e-85 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.014G125700 [exp] 288 / 1e-83 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10035838 pacid=23147399 polypeptide=Lus10035838 locus=Lus10035838.g ID=Lus10035838.BGIv1.0 annot-version=v1.0 ATGGCTTCTAAAAACCAGAACAAGCCTCCACTAAACGCCACCATGCCCATTTCAGCTCCTCTGCCGTCTTCACGTAGGAAGTCCATTGGTGGATATGAGC TGAGTTCTGATACAACAAGGTATAAGCTTGGAGTTGATAATATGGTTGGGTCAGCCAGCATTAACGGAAGAATGAGGCAAGCTTTCTCCATTATGAATGG AGAACAGGAGCTTACTCCTAGCAGTGACCCTCCGAGCAATGCTGGGTCTGAGTATGGTGGAGGAGGAGCCAACATTGAGTTCACCAGAGAAGATGTTGAT ACTTTGTTGAATGAGAGAATGAGATACAAAAGCAAGTACAACTACAAGGAGAGGTGTGAAAATATGATGGACTATATAAAAAGGTTAAGGCTTTGCATCA GATGGTTTCAAGATGTAGAAGGGAATTACCTGTTTGAGCAGGAAAAATTGCTTACCGCTTTGGAATTTGCTGAAGCTAGATGTGCTGAATCAGAGTTGGT TTTGAAGAACAGGGAAGAAGAACTAAATTTAATTATAGTGGAGTTGAGAAAGAGTCTTGCTTCTTTACAAGATAAACTCTCCAAAGAAGAATCAGAGAAG ATGGTTGCAGTGGATTCTCTTTCAAAAGAGAAAGAGGCAAGAGCTGACATAGAGAAGTCTCGGGCATCTCTAACTGAGGAGCTGGGGAAGGTCCAAGGAG AGCTTCAGAGTGCTAACCAGAGGATAACTTCAGTAAATGATATGTACAAGCTGTTACAAGAATATAATTCAAGTTTACAGCTATACAACACTAAACTTCA GACGGATCTGGATGCAACCCATGAGAATCTCAAGAGTGCAGAACAAGAGAAAGTCACTATAGTGGAGAGCCTGGGCAACTTAAGGGGTCAGTATAAGTCA TTGCAAGAGCAATACATGTCATCTCAAGAATCAGCAGATGAAGCTGTGAAACAGAAGGATCTGTTGATGAGTCAAGTTTCATCTCTAATGGGAGAGCTGA AACAAGTGAGAGATGACCGTGATCGACTAACACTTCAAGTGCAAGCTTTGACAACTGAAGTGACCAGTTACCAACAAGAGTCGCAAAAATCAAATGAATT CGAGGAAAAATATCTGTTCCAAAGTAAAGAGATGGTGGCCTTGCAGGTAAAGTTAGATGCTGCTGAGAGTAGATTAAAGGTGTCCGACCTGTCTGCATTT GAGACAAGAACCGAGTATGAAGCACAGAAACAACTTGTACTAACATTACAAAGTCGGTTGGAAGATGCCGAGCAGAAAGTTATTGAAGGAGAGCAACTAC GGAAGAAGTTACATAATACAATCTTGGAACTCAAAGGCAACATTCGTGTCTTTTGTCGTGTGAGGCCTTCATTGAATGATGATATTCATGGCAATGAAAG GAAGGTTGTTTCTTATCCCACTTCACTAGAAGCTCTTGGACGAGGCATCGATTTAAATCAAAATGGCCAAAAGTACTCATTTTCTTTTGATCAAGTTTTT ACCCCCGAGTCATCGCAAGAGGATGTATTTGAGGAAATCTCACAGCTTGTTCAGAGTGCTCTTGATGGCTACAAGGTATCCATTTTTGCCTACGGGCAAA CAGGATCTGGTAAAACATATACCATGATGGGCAAACCAGGGCAACCTGAGCAAAAGGGACTGATTCCTCGAACGTTAGAACAAATTTTTCAAACAAGGGA ATCCCTTAAATTGCAAGGCTGGAAATATGAAATGCAGGTGTCAATGTTGGAGATTTACAATGAAACAATTCGTGACTTGTTATCAACCAATCGAGATGTA TCCAGAGATAGCACTCCCAATGGAAAGCAATATGCAATCAAACATGAACCCAACGGGAACACAACTGTATCCGACCTAACTGTTGTAGATGTTCAAAGCT CTAGGGAGGTGGCTTATCTGCTGGAGCGGGCTGCTCACAGCAGGTCAGTTGGGAAGACACAGATGAATGAACAATCATCAAGAAGCCATTTTGTTTTCAC TCTACGAATATCTGGCATCAATGAGAGCACTGAACAACAAGTACAGAGTGTTCTGAATCTCATTGATCTTGCTGGAAGTGAGCGCCTTTCTAAGAGTGGT TCCACTGGCGATAGACTCAAAGAAACACAAGCCATCAACAAAAGTCTGTCCTCGCTAAGCGATGTCATATTTGCCTTGGCAAAGAAGGAAGATTTTGTAC CATTTAGGAACTCAAAGCTCACTTATCTACTTCAGCCATGTCTAGGTGGAGATTCAAAGACACTGATGTTTGTAAATATATCTCCGGAGCCATCATCTGT TGGTGAGTCACTGTGCTCACTGAGATTTGCATCCAGAGTTAACTCGTGCGAGATAGGTGTTCCCCGACGGCAGACCAACTTGCGATCCCTAGACTATCGG TTGAGCTTGGGTTGA
AA sequence Show only first row Show all	>Lus10035838 pacid=23147399 polypeptide=Lus10035838 locus=Lus10035838.g ID=Lus10035838.BGIv1.0 annot-version=v1.0 MASKNQNKPPLNATMPISAPLPSSRRKSIGGYELSSDTTRYKLGVDNMVGSASINGRMRQAFSIMNGEQELTPSSDPPSNAGSEYGGGGANIEFTREDVD TLLNERMRYKSKYNYKERCENMMDYIKRLRLCIRWFQDVEGNYLFEQEKLLTALEFAEARCAESELVLKNREEELNLIIVELRKSLASLQDKLSKEESEK MVAVDSLSKEKEARADIEKSRASLTEELGKVQGELQSANQRITSVNDMYKLLQEYNSSLQLYNTKLQTDLDATHENLKSAEQEKVTIVESLGNLRGQYKS LQEQYMSSQESADEAVKQKDLLMSQVSSLMGELKQVRDDRDRLTLQVQALTTEVTSYQQESQKSNEFEEKYLFQSKEMVALQVKLDAAESRLKVSDLSAF ETRTEYEAQKQLVLTLQSRLEDAEQKVIEGEQLRKKLHNTILELKGNIRVFCRVRPSLNDDIHGNERKVVSYPTSLEALGRGIDLNQNGQKYSFSFDQVF TPESSQEDVFEEISQLVQSALDGYKVSIFAYGQTGSGKTYTMMGKPGQPEQKGLIPRTLEQIFQTRESLKLQGWKYEMQVSMLEIYNETIRDLLSTNRDV SRDSTPNGKQYAIKHEPNGNTTVSDLTVVDVQSSREVAYLLERAAHSRSVGKTQMNEQSSRSHFVFTLRISGINESTEQQVQSVLNLIDLAGSERLSKSG STGDRLKETQAINKSLSSLSDVIFALAKKEDFVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEPSSVGESLCSLRFASRVNSCEIGVPRRQTNLRSLDYR LSLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10035838 [exp]	0	1
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10036621 [exp]	1.0	0.9713
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10016091 [exp]	3.9	0.9318
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10015212 [exp]	5.3	0.9292
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10008770 [exp]	5.5	0.8962
AT5G57830			Protein of unknown function, D...		Lus10010774 [exp]	5.8	0.9332
AT5G45290			RING/U-box superfamily protein...		Lus10037267 [exp]	9.5	0.9055
AT3G59110			Protein kinase superfamily pro...		Lus10029788 [exp]	9.9	0.9110
AT3G01810			unknown protein		Lus10015805 [exp]	10.1	0.9128
AT5G38900			Thioredoxin superfamily protei...		Lus10034368 [exp]	10.6	0.8776
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10002876 [exp]	13.4	0.9054

Compare expression of checked genes

Lus10035838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.