Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01440 232 / 2e-77 PnsL3, PQL2, PQL1 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) AT4G21280 63 / 5e-12 PSBQ, PSBQA, PSBQ-1 PHOTOSYSTEM II SUBUNIT Q-1, photosystem II subunit QA (.1.2) AT4G05180 62 / 2e-11 PSII-Q, PSBQ, PSBQ-2 photosystem II subunit Q-2 (.1) AT1G14150 47 / 3e-06 PnsL2, PQL2, PQL1 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036622 [exp] 436 / 7e-158 AT3G01440 237 / 2e-79 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) Lus10007627 [exp] 54 / 1e-08 AT4G05180 281 / 7e-97 photosystem II subunit Q-2 (.1) Lus10018385 [exp] 53 / 3e-08 AT4G05180 275 / 3e-94 photosystem II subunit Q-2 (.1) Lus10020071 [exp] 47 / 2e-06 AT4G05180 282 / 2e-97 photosystem II subunit Q-2 (.1) Lus10006751 [exp] 45 / 3e-05 AT4G05180 271 / 7e-89 photosystem II subunit Q-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G416400 [exp] 215 / 2e-70 AT3G01440 230 / 2e-76 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) Potri.004G031500 [exp] 59 / 1e-10 AT4G05180 269 / 1e-91 photosystem II subunit Q-2 (.1) Potri.011G031300 [exp] 59 / 2e-10 AT4G05180 261 / 2e-88 photosystem II subunit Q-2 (.1) Potri.017G129700 [exp] 45 / 8e-06 AT2G01918 100 / 7e-27 PsbQ-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05757 [flax] [poplar] PsbQ Oxygen evolving enhancer protein 3 (PsbQ)
Representative CDS sequence Show only first row Show all	>Lus10035839 pacid=23147472 polypeptide=Lus10035839 locus=Lus10035839.g ID=Lus10035839.BGIv1.0 annot-version=v1.0 ATGGCCAACTTAACAAACTTAAACCATCCAACAGAATCCATCCCAAACCTCCACACTAACAACATTAACTCGAAAACTTGCGGAAACCCACCAAAGCTCC CACCACTTGCTCTTTCCAGGAAACCAGAGCAACCACTGAAGTTGCAGACCACCAGAAGATCATTAGCATTAGGCCTTATCTCCATAGCCCCCCTCATCGC AAAATCTGGGGTTGGAACTTCTCTTGCTGCCGATAACGGCTTGTGGCTCGACGGGCCATTGCCCATTCCCACCATTGACAACAAAGAGCTTGCAAATCCA AGGACAGGGACTCGTTCTTTCCTGAAGAACGGAATCTACATAGCTGACATTGCAGTGAAAGGGAGACTTTACAGGATCATGAAGTCTGCCTTTGATCTTC AGGCTATGGAGGATTTGATTGGTCCAGACACTCTCAACTATGTCAGGAGATACCTCAGGCTCAAGTCCACCTTCTTGTACTACGATTTCGACAATGTCAT CTCTGCTGCTGCTGCAGAAGATAAGAAGCCTCTCCTCGATCTCGGTATCAGACTTTTTGACAATTTTGAACAGCTTGAGGAAGCAACAAGGAAGAACAAC CTGCCTCAAACATTATCGTGTTATCAGGACACAAGCTTGCTTCTCAAGGAGGTGATGGACATGGTGGCCTAA
AA sequence Show only first row Show all	>Lus10035839 pacid=23147472 polypeptide=Lus10035839 locus=Lus10035839.g ID=Lus10035839.BGIv1.0 annot-version=v1.0 MANLTNLNHPTESIPNLHTNNINSKTCGNPPKLPPLALSRKPEQPLKLQTTRRSLALGLISIAPLIAKSGVGTSLAADNGLWLDGPLPIPTIDNKELANP RTGTRSFLKNGIYIADIAVKGRLYRIMKSAFDLQAMEDLIGPDTLNYVRRYLRLKSTFLYYDFDNVISAAAAEDKKPLLDLGIRLFDNFEQLEEATRKNN LPQTLSCYQDTSLLLKEVMDMVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10035839 [exp]	0	1
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10036622 [exp]	1.0	0.9720
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	2.0	0.9693
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10038253 [exp]	2.8	0.9616
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10023436 [exp]	3.0	0.9649
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10022507 [exp]	3.7	0.9562
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10040314 [exp]	4.5	0.9507
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10025847 [exp]	5.5	0.9571
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	5.5	0.9590
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10000828 [exp]	6.0	0.9523
AT1G73110			P-loop containing nucleoside t...		Lus10041627 [exp]	6.3	0.9539

Compare expression of checked genes

Lus10035839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.