Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26170 118 / 2e-33 WRKY ATWRKY50, WRKY50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) AT5G64810 116 / 2e-32 WRKY ATWRKY51, WRKY51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) AT1G29860 107 / 3e-28 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT5G49520 107 / 3e-27 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT4G18170 105 / 5e-27 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT2G47260 104 / 1e-26 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT2G46130 97 / 5e-26 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT5G46350 102 / 6e-26 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1) AT3G01970 98 / 6e-26 WRKY ATWRKY45, WRKY45 WRKY DNA-binding protein 45 (.1) AT5G13080 97 / 1e-25 WRKY ATWRKY75, WRKY75 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036624 [exp] 265 / 3e-90 AT5G26170 125 / 2e-36 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Lus10006848 [exp] 108 / 1e-28 AT5G26170 133 / 7e-39 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Lus10012029 [exp] 109 / 1e-27 AT1G13960 108 / 4e-25 WRKY DNA-binding protein 4 (.1.2) Lus10004537 [exp] 106 / 2e-27 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10037785 [exp] 107 / 3e-27 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004612 [exp] 105 / 4e-27 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10017067 [exp] 106 / 6e-27 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10037094 [exp] 103 / 3e-26 AT1G69310 209 / 1e-65 WRKY DNA-binding protein 57 (.1.2) Lus10003128 [exp] 99 / 6e-26 AT5G13080 179 / 2e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G079800 [exp] 127 / 7e-37 AT5G64810 140 / 3e-42 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Potri.005G085200 [exp] 123 / 7e-35 AT5G64810 145 / 4e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Potri.006G224100 [exp] 111 / 1e-30 AT5G26170 139 / 2e-42 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Potri.010G147700 [exp] 111 / 6e-29 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.002G059100 [exp] 110 / 1e-28 AT4G18170 176 / 1e-52 WRKY DNA-binding protein 28 (.1) Potri.005G203200 [exp] 107 / 7e-28 AT4G18170 187 / 3e-57 WRKY DNA-binding protein 28 (.1) Potri.008G103300 [exp] 107 / 2e-27 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.001G352400 [exp] 106 / 2e-27 AT1G29860 184 / 1e-56 WRKY DNA-binding protein 71 (.1) Potri.015G099200 [exp] 102 / 3e-27 AT5G13080 154 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.011G079300 [exp] 105 / 6e-27 AT1G29860 186 / 2e-57 WRKY DNA-binding protein 71 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10035841 pacid=23147655 polypeptide=Lus10035841 locus=Lus10035841.g ID=Lus10035841.BGIv1.0 annot-version=v1.0 ATGAACTTGATTCGTCCTCCTCCTCCTCCTCCTCCTCCGCCATGCCAAAACCCTAACCCTAATTGTAGTAAATCCAACCACAATCATCCATTTCCTCCAC AGCAGCCTTTTCGACAATTCCCTGATCCTCTAGATTTCCAATTCTCCGATTTCTTGCTTCCCCCAGATCATCATCCTGATCATGGTGGGTTTGAAGGTGA TGAAGAAATTGATAATATTTTTGGTGGTAATTATTCATCTCCACAGAGCAATATCACGGCAACCTCACCCCTCCAAATTGGATCCGATGGCAGCTGCAAC TCCTTCTCCTCCTGGACTATGATCGGAAATGAAGCCGAAGGAAGTGGGAGGATGAGGAAGGTGGAAGAGCAGAAGAAGAGGAAGGGGGGAGTGGTGGTTG ATAGAGTGGCATTTAGGACCAAATCTGAAGTGGATGTGATGGCTGATGGCTTCAAGTGGAGGAAGTACGGCAAAAAATCTGTTAAAAACACACCTTATCC CAGGAACTACTACAAATGTCCAAGTGTGGGATGCAATGTGAAGAAGAGAGTGGAAAGAGATAGGGAAGACTCGAGCTTTGTGATCACAACCTACGAGGGA GTTCACAACCATCATCATCATCAAATCTCACCTTCCAAAGTCCAAGTGGAATTACTTCGATGA
AA sequence Show only first row Show all	>Lus10035841 pacid=23147655 polypeptide=Lus10035841 locus=Lus10035841.g ID=Lus10035841.BGIv1.0 annot-version=v1.0 MNLIRPPPPPPPPPCQNPNPNCSKSNHNHPFPPQQPFRQFPDPLDFQFSDFLLPPDHHPDHGGFEGDEEIDNIFGGNYSSPQSNITATSPLQIGSDGSCN SFSSWTMIGNEAEGSGRMRKVEEQKKRKGGVVVDRVAFRTKSEVDVMADGFKWRKYGKKSVKNTPYPRNYYKCPSVGCNVKKRVERDREDSSFVITTYEG VHNHHHHQISPSKVQVELLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10035841 [exp]	0	1
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10042750 [exp]	1.0	0.9272
AT1G69880		ATH8	thioredoxin H-type 8 (.1)		Lus10036698 [exp]	1.4	0.9262
AT3G13130			unknown protein		Lus10006387 [exp]	2.4	0.9143
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10036130 [exp]	2.8	0.9187
AT3G07610		IBM1	increase in bonsai methylation...		Lus10025380 [exp]	3.5	0.8919
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036779 [exp]	3.7	0.9053
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Lus10004846 [exp]	3.9	0.9182
AT1G29380			Carbohydrate-binding X8 domain...		Lus10015259 [exp]	4.6	0.9190
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10037147 [exp]	5.5	0.8978
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10008004 [exp]	6.0	0.8991

Compare expression of checked genes

Lus10035841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.