Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04940 1096 / 0 transducin family protein / WD-40 repeat family protein (.1) AT5G08390 68 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 67 / 6e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 66 / 9e-11 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 65 / 2e-10 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G18080 62 / 8e-10 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT3G21540 59 / 1e-08 transducin family protein / WD-40 repeat family protein (.1) AT1G73720 58 / 2e-08 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT1G48630 55 / 9e-08 RACK1B_AT receptor for activated C kinase 1B (.1) AT3G49660 55 / 9e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036625 [exp] 1434 / 0 AT4G04940 1396 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10018458 [exp] 72 / 2e-12 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 72 / 2e-12 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 68 / 3e-11 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 67 / 9e-11 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10026837 [exp] 61 / 5e-09 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003487 [exp] 59 / 6e-09 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 59 / 8e-09 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10038425 [exp] 59 / 2e-08 AT1G73720 956 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078900 [exp] 1164 / 0 AT4G04940 1394 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.018G148132 [exp] 477 / 6e-162 AT4G04940 442 / 1e-148 transducin family protein / WD-40 repeat family protein (.1) Potri.018G148066 [exp] 437 / 4e-145 AT4G04940 701 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.008G002300 [exp] 69 / 9e-12 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 69 / 1e-11 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G087200 [exp] 68 / 1e-11 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.010G255400 [exp] 67 / 4e-11 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G116900 [exp] 64 / 2e-10 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.015G041600 [exp] 59 / 4e-09 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G156900 [exp] 60 / 6e-09 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF04192 [flax] [poplar] Utp21 Utp21 specific WD40 associated putative domain
Representative CDS sequence Show only first row Show all	>Lus10035842 pacid=23147605 polypeptide=Lus10035842 locus=Lus10035842.g ID=Lus10035842.BGIv1.0 annot-version=v1.0 ATGGGGATATTCGAACCTTACAGAGCGATTGGATATATAACGAGTGGGGTTCCTTTCTCCGTTCAGCGGTTGGGCACTGAAACTTTCGTCACCGTCAGTG TCGGCAAGGCTTTTCAGGTTTACAATTGCTCTAAGCTCACATTGGTCCTTGTGAGTCCTCAACTTCCAAGCAAGATTCGCGCTCTAGCCTCTTATCGCGA CTTCACATTTGCTGCATATGCCAGCCACGTTGCTGTGTTCAAACGTGCTCAACAGGTCGCTACTTTGAGCAGACACAGTGCCAAAATTGGTCGGTTGTTG GTCTTTGGAGATTACGTCCTCAGTGTTGATCTAGATGGGAATTTGTTTACATGGGCTTTTAAGGGTATTGACGGGGAGCCTGCTCCAATTGGACACATTA AGTTGGATGATGGTTTCACCCCCTCTTGTATACTTCACCCAGAAACTTATCTGAATAAGGTTGTGCTTGGCAGCCAGGAAGGTTCATTACAGCTGTGGAA CATTAGTACCAAAAAGAAACTTTACGAGTTTAGTCGGTGGAATTGTTCCATTACCAGCTGTGTGTCCTCACCAGCACTCGATGTTGTTGCTGTGGGTTGT GGTGATGGGAAGATTCACGTGCATAATATTCGCTATGATGAAGAGTTGGTTACCTTTTCCCATTCTACCCGTGGTGCAGTTACTGCCTTGTCATTCAGTA CAGGTAAGATTTCGAAGCGGGCGTATCACATGTTAGCATATGATGTTTTTGAGCATGTTCTTTCTGTAGCTGAGGTTCCAACACCATTGAACCTTTACAT ATCTTATATTCTTACTCCTCAAATTTTGTTAGTAGAATCTGTTCTGACATGGTGTTATCTGTCTATAGATGGTCAACCACTTTTGGCATCTGGAGGTTCT TCTGGTGTTATCAGCATCTGGAATCTTGAAAAAAGACGGATTCAATCAGTCATTGGAGAGGCTCATGACAGTGCAGTTGTTTCCTTGCACTTCTTTGCTA ATGAACCTGTGCTGATGAGTGCAGCAGCAGATAACTCCCTCAAGATGTGGATTTTTGACACAAGTGATGGAGATCCTCGCCTTCTACGTTTTCGAAGTGG ACACAGCGCTCCTCCACTTTGCATAAGGGAGCGCGATTGGTGCAATGTTGTTACATGCCATATGGACACGTCAGAGGCATACATATGGAGGCTTCAAAAT TTTGTTCTGGGCAAGCATATCCTCAGGCCATGTCCAGAGAATCCAACACCTGTAAAGGCCTGTGCTATCAGCGCATGCGGCAATTTTGCAGTCCTGGGAA CAGCAGGTGGCTGGATAGAACGATTCAATCTTCAATCAGGGATCAGCCGTGGTAGTTACTTTGACATGTCGGAAAGAAATCTTGCCCACAAAGGTGGAGT GGTAGGAGTTGCTTGTGATTCAACGAATACCCTAATGATAAGTGCTGGGTATCATGGAGACATAAAGGTTTGGGATTTTAAGGGACGTGCATTAAAATCC AGATGGGAAGTTGGATGTTGTCTCGTTAAGGCTGTTTATCATCGCTACAATGGTCTTTTTGCTACTGTTGCCGATGATTTGGTTATCCGTGTATTTGACG TTGTGGCATTGAGAATGGTTCGCAAGTTTGAAGGTCACACAGACCGCGTTACAGATTTGTGTTTTAGTGAAGATGGTAAATGGCTTTTGTCATCTAGTAT GGATGGCACATTAAGAATATGGGATGTCATCTTAGCAAGACAAATTGATGCACTACACGTAGATGTTGCCATCACAGCTTTGTCTTTGTCCCCAAACATG GATGTTTTGGCCACAACTCATGCTGATCAAAATGGCGTCTATCTATGGGTTAATCAGTCTATGTTCTCTCAAGGTACATCAGTCGATTCTTATGCTAGTG GGAAGGGAGTAGTTAGTGTGAAATTGCCATCTATATCTGCTACGGAAGATTCTGAAGACGCAGATCACGATGGGTCTAAAACAAACGAGACAATGCGTAG TGAGGCCCTTGGTATGTCAGCTTTCAGTCAGCAACAAATCCCAGGTCTTGTAACGCTCTCTATGTTGCCTAAAAGTCAATGGCAGAGCTTGATCAACCTA GACATCATAAAGGTACGCAATAAACCCATTGAACCGCCCAAGAAACCTGAAAAGGCTCCGTTTTTCTTGCCTTCGGTTCCATCTCTCTCTGGAGATATTT TGTTTAAACCTAGTGACGCTGCCAAGGATGGTATGGAAGTAGATGAATTGAAGAACAAGGGAAAACATGAGATGACAGCGGTACCATTGTCAAAGTTTTC GGAGCTTCTCCATTCATGTGCAGAGACAAATAGCTTTTCGGCATTCACTGATTACATCAAAGGTCTATCCCCGTCAAATCTGGATATGGAGCTTCGAATG CTTCAGATTATCGATGACAACGATGAAGAAGAAGAAGAAGAAGAGGTGGAAAAGAAGCCCGAGCTTGTATCAATAGAACTCCTTTTCGATTATTTCATCC ATGAGATATCCAGGAGAAACAACTTCGAGTTCATCCAGGCTCTGATAAGATTATTCCTCAAGATTCACGGGGAAACAGTGCGCCGCCAGCCGAGGCTAAA GGATAAAGCCAAGAAACTTGTCGAAATTCAGTCAGCAGCTTGGCAGAAGATGGATAGACTGTTTCAGAGCACCAGATGCATGGTCACATTCCTTAGCAAA TCACAGTTTTAA
AA sequence Show only first row Show all	>Lus10035842 pacid=23147605 polypeptide=Lus10035842 locus=Lus10035842.g ID=Lus10035842.BGIv1.0 annot-version=v1.0 MGIFEPYRAIGYITSGVPFSVQRLGTETFVTVSVGKAFQVYNCSKLTLVLVSPQLPSKIRALASYRDFTFAAYASHVAVFKRAQQVATLSRHSAKIGRLL VFGDYVLSVDLDGNLFTWAFKGIDGEPAPIGHIKLDDGFTPSCILHPETYLNKVVLGSQEGSLQLWNISTKKKLYEFSRWNCSITSCVSSPALDVVAVGC GDGKIHVHNIRYDEELVTFSHSTRGAVTALSFSTGKISKRAYHMLAYDVFEHVLSVAEVPTPLNLYISYILTPQILLVESVLTWCYLSIDGQPLLASGGS SGVISIWNLEKRRIQSVIGEAHDSAVVSLHFFANEPVLMSAAADNSLKMWIFDTSDGDPRLLRFRSGHSAPPLCIRERDWCNVVTCHMDTSEAYIWRLQN FVLGKHILRPCPENPTPVKACAISACGNFAVLGTAGGWIERFNLQSGISRGSYFDMSERNLAHKGGVVGVACDSTNTLMISAGYHGDIKVWDFKGRALKS RWEVGCCLVKAVYHRYNGLFATVADDLVIRVFDVVALRMVRKFEGHTDRVTDLCFSEDGKWLLSSSMDGTLRIWDVILARQIDALHVDVAITALSLSPNM DVLATTHADQNGVYLWVNQSMFSQGTSVDSYASGKGVVSVKLPSISATEDSEDADHDGSKTNETMRSEALGMSAFSQQQIPGLVTLSMLPKSQWQSLINL DIIKVRNKPIEPPKKPEKAPFFLPSVPSLSGDILFKPSDAAKDGMEVDELKNKGKHEMTAVPLSKFSELLHSCAETNSFSAFTDYIKGLSPSNLDMELRM LQIIDDNDEEEEEEEVEKKPELVSIELLFDYFIHEISRRNNFEFIQALIRLFLKIHGETVRRQPRLKDKAKKLVEIQSAAWQKMDRLFQSTRCMVTFLSK SQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	0	1
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10009545 [exp]	1.4	0.9604
AT1G10490			Domain of unknown function (DU...		Lus10005792 [exp]	1.4	0.9596
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	1.7	0.9587
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10031414 [exp]	2.6	0.9490
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10013182 [exp]	2.8	0.9553
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	3.9	0.9524
AT5G64420			DNA polymerase V family (.1)		Lus10025659 [exp]	4.2	0.9270
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10020369 [exp]	4.5	0.9451
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10037444 [exp]	4.9	0.9484
AT4G30150			unknown protein		Lus10007572 [exp]	5.2	0.9475

Compare expression of checked genes

Lus10035842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.