Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21940 304 / 4e-103 ATSK1 shikimate kinase 1 (.1.2.3.4.5) AT4G39540 301 / 5e-102 ATSK2 shikimate kinase 2 (.1.2.3) AT3G26900 125 / 1e-33 ATSKL1 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036626 [exp] 390 / 2e-133 AT5G64860 482 / 1e-165 disproportionating enzyme (.1) Lus10035171 [exp] 99 / 9e-24 AT3G26900 203 / 1e-64 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3) Lus10032000 [exp] 60 / 6e-10 AT3G26900 141 / 5e-40 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3) Lus10030990 [exp] 49 / 3e-06 AT2G35500 445 / 6e-154 shikimate kinase-like 2, shikimate kinase like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G081000 [exp] 324 / 5e-111 AT2G21940 323 / 9e-111 shikimate kinase 1 (.1.2.3.4.5) Potri.005G084600 [exp] 323 / 8e-111 AT2G21940 304 / 2e-103 shikimate kinase 1 (.1.2.3.4.5) Potri.002G061100 [exp] 249 / 3e-82 AT2G21940 224 / 2e-72 shikimate kinase 1 (.1.2.3.4.5) Potri.017G062800 [exp] 134 / 3e-37 AT3G26900 291 / 9e-99 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3) Potri.019G048200 [exp] 44 / 3e-05 AT2G16790 228 / 1e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G096600 [exp] 45 / 4e-05 AT2G35500 447 / 5e-157 shikimate kinase-like 2, shikimate kinase like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01202 [flax] [poplar] SKI Shikimate kinase
Representative CDS sequence Show only first row Show all	>Lus10035843 pacid=23147627 polypeptide=Lus10035843 locus=Lus10035843.g ID=Lus10035843.BGIv1.0 annot-version=v1.0 ATGGATGCAAATGTTGCTATCACCATGCTTCCTTCCTCCTTCGGAGTCTATCCCAATATCCATAGATTCGGGTCCGCATCGCTGCTGCCGGCGAGGACGA TGAATAAACAACCACAACTGTCCCTTATGCCAGCGGTGCGATTCTCGGTCAGTAGAGAAAACAGGATTCGGCATCGCTCGCTCTGCTCGGTGGATGTCTC CTGCTGCTACAACAACTACCAATGTGATCACTCCATATTCCGTTATTTCGTGTTCTTGACTCCATCAACCTTGGAATCTGGAAACTCTTATTCTTTGTTC GATGAAACATTTCTTTTGAAGACCAAGTCACAAGAGGTTGAACCTTACTTGAGCGGACGCTGTATTTATCTGGTTGGAATGATGGGTTCTGGGAAAACTA CTGTGGGCAAAGTTCTTGCAGATGTACTTCGGTATTCATTCCGTGACAGTGATGCATTGATCGAAAAGTCTGTTGATGGGATATCAGTGGCTGAAATATT TAACCTCTATGGAGAATGTTTCTTCAGAGATAAAGAGACAGAGGCATTGAAGGAATTATCTCTAAGCAACAGACTAGTTGTTTCTACTGGTGGAGGTGCA GTTATACGGCCCATTAATTGGAAATATATGCACAAGGGAATTAGTGTCTGGTTGGATGTGCCCTTGGAAGCATTGGCACAAAGGATTGCTGCAGTGGGGA CTGGCTCTCGACCCCTTCTCCATGAAGAATCTGGCGATGCATACACAAAGGCTTTGAGACGTCTGTCTACCCTTTTTGAAGAGAGAAGTGAAGCTTACGA GAATGCTACAGTCAGGGTCTCCTTGGAAAATATTGCTGCTAAGCTTGGCCATAGGGATGTGTTGGGTGTAACTCCAGCAACAATTGCTATTGAGGCTCTG GATAAAATAGAAAGCTTCCTGGAACAAGAAGATAGCGAGGCTAGAATGAAAGCTTGA
AA sequence Show only first row Show all	>Lus10035843 pacid=23147627 polypeptide=Lus10035843 locus=Lus10035843.g ID=Lus10035843.BGIv1.0 annot-version=v1.0 MDANVAITMLPSSFGVYPNIHRFGSASLLPARTMNKQPQLSLMPAVRFSVSRENRIRHRSLCSVDVSCCYNNYQCDHSIFRYFVFLTPSTLESGNSYSLF DETFLLKTKSQEVEPYLSGRCIYLVGMMGSGKTTVGKVLADVLRYSFRDSDALIEKSVDGISVAEIFNLYGECFFRDKETEALKELSLSNRLVVSTGGGA VIRPINWKYMHKGISVWLDVPLEALAQRIAAVGTGSRPLLHEESGDAYTKALRRLSTLFEERSEAYENATVRVSLENIAAKLGHRDVLGVTPATIAIEAL DKIESFLEQEDSEARMKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Lus10035843 [exp]	0	1
AT5G64860		DPE1	disproportionating enzyme (.1)		Lus10036626 [exp]	1.0	0.9566
AT3G29185			Domain of unknown function (DU...		Lus10015378 [exp]	6.9	0.9177
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10038240 [exp]	7.6	0.9274
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	7.9	0.9411
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10013611 [exp]	9.3	0.9500
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10032226 [exp]	9.4	0.9545
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10027761 [exp]	10.8	0.9497
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031265 [exp]	12.0	0.9425
AT2G39518			Uncharacterised protein family...		Lus10040298 [exp]	12.8	0.9442
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10035532 [exp]	13.7	0.9399

Compare expression of checked genes

Lus10035843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.