Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09970 704 / 0 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT2G46660 477 / 4e-164 CYP78A6 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) AT3G61880 474 / 4e-163 CYP78A9 cytochrome p450 78a9 (.1.2) AT1G13710 453 / 7e-155 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT1G74110 450 / 2e-153 CYP78A10 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) AT1G01190 449 / 5e-153 CYP78A8 "cytochrome P450, family 78, subfamily A, polypeptide 8", cytochrome P450, family 78, subfamily A, polypeptide 8 (.1) AT2G40890 244 / 4e-74 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT5G67310 232 / 2e-69 CYP81G1 "cytochrome P450, family 81, subfamily G, polypeptide 1", cytochrome P450, family 81, subfamily G, polypeptide 1 (.1) AT5G07990 220 / 4e-65 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G06900 218 / 4e-64 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036627 [exp] 1004 / 0 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005780 [exp] 774 / 0 AT5G09970 696 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005995 [exp] 461 / 1e-157 AT2G46660 708 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10030216 [exp] 456 / 7e-156 AT2G46660 697 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10017334 [exp] 447 / 3e-152 AT3G61880 656 / 0.0 cytochrome p450 78a9 (.1.2) Lus10015788 [exp] 418 / 3e-142 AT1G13710 471 / 1e-163 KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) Lus10001670 [exp] 394 / 7e-132 AT2G46660 588 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10006821 [exp] 287 / 5e-94 AT5G09970 259 / 6e-84 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10033524 [exp] 248 / 1e-75 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G084500 [exp] 788 / 0 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.007G081200 [exp] 766 / 0 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G200400 [exp] 719 / 0 AT5G09970 681 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.002G060900 [exp] 718 / 0 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.014G102700 [exp] 466 / 6e-160 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G083900 [exp] 459 / 6e-157 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G175200 [exp] 452 / 2e-154 AT2G46660 694 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.003G146800 [exp] 449 / 2e-153 AT2G46660 659 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G054800 [exp] 432 / 3e-146 AT1G74110 502 / 8e-174 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.003G173500 [exp] 430 / 8e-146 AT1G74110 491 / 3e-170 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10035844 pacid=23147370 polypeptide=Lus10035844 locus=Lus10035844.g ID=Lus10035844.BGIv1.0 annot-version=v1.0 ATGGAAAACTTTGATCACCACCACCATTTCCTCATGAACTCCAAAGATACCACCTGGTACTTCTTCACACTTCCAGCATTTCTGGGTTCCCAAACCTTCC TAGACTCCTACATCCTCTTCTCTCTCCTCGCCGCTTTCCTCTCCATCGGACTCCTTACATGGGCTTTCTCCACCGGCGGCACCGCTTGGAAGCACGGCCG CAACTCTCGCGGCCTGGTCCCCATCCCTGGCCCACGAGGCCTCCCAATATTCGGCAGCCTCTTCTCCCTCAGCCGCGGCTTGGCCCACCGGACCTTGGCT TCCTTAGCTTGGTCCCGAGCCAACACCCAGCTCATGGCTTTCAGCCTCGGCACGTCAACTCCTCTTGTCGTGGCTTCAGACCCGCACACTGCTAAAGAGA TCCTCACCTCACCTAGTTTCGCTGACCGTCCGATCAAACAGTCGGCTAAGAGCCTCATGTTCAGCCGAGCCATCGGGTTTGCTCCCAACGGGGTCTACTG GCGTCTCCTCAGGAGAATCGCTTCGGCTCACCTCTTCTCTCCTCGGCGCATATCGGCTCATGAGGGTCTACGGAAGGTGGAGTGCACCGCCATGCTGCGG GGTGTGGCCCGTGAGATGGAGGTCAAGGGGCGCGTGGAGCTACGTTCTCACCTCCAGTTGGCTTCTCTTAGCAACATCATGGGTAGCGTGTTCGGGAAGC GATACGACGCCGCTGAGAATTCGGAGGAGCTGGAACGGCTCAAGGAGATGGTTCGGGAAGGGTTCGAGCTTTTGGTGGCGTTTAACTGGTCGGATTATCT GCCGTGGCTGAGCATGTTTTACGACCCGTACCGTATTCACGAGCGTTGTTTGAAACTCGTACCCCGAGTCAAGCAACTCGTTAAGGGGATCATTGAAGAG CATCGCTGCCGCATGGTCAATGGGCCCACTCCCGAGTACTCCGGCACGGACACCGGTGATTTCGTTGACGTGTTACTCTCCTTGGACGGGGAGGAGAAGC TGCAGGAGGATGACATGATCGCTGTCCTTTGGGAAATGATTTTCAGAGGAACCGACACGACTGCTCTATTGACCGAGTGGGTCATGGCTGAATTGGTACT CCACCCAGAAATCCAGCACAAGCTTCGAGTTGAGCTGCAGAACGTAACGTCAGAAGGCGGACTCTTAACGGAAGCTGACTTGGCGAAGTCATCTTACTTG CAGGCCGTGGTGAAAGAAACCCTAAGGGTCCATCCACCTGGCCCACTCCTATCTTGGGCCAGGCTTTCCACGTCGGACGTCCAGCTCAGTAACGGCATGC TGATACCTGCGAATACGACCGCCATGGTGAACATGTGGGCCATCACCCACGACCCGAACGTATGGACCGACCCGCTGGAGTTTCGCCCCGAGAGGTTTAT GGTGGAAGGTGGTGACGTGGATGTCCGTGGAGGCGATCTGAGGCTTGCTCCGTTCGGTGCCGGGAGGAGAGTCTGCCCCGGGAAGAATCTGGGGATGGTG ACGGTGGGGCTGTGGGTGGCGAAGCTGGTGACTGGATTTGAGTGGTCGGAGGATGGGTCCCAGCCTGTGGAACTTGGTGAAGTGTTGAAGCTGTCTTGTG AGATGAAGCATCCTTTGCAAGCTGTAGCGGTGGCGCTGGAATGA
AA sequence Show only first row Show all	>Lus10035844 pacid=23147370 polypeptide=Lus10035844 locus=Lus10035844.g ID=Lus10035844.BGIv1.0 annot-version=v1.0 MENFDHHHHFLMNSKDTTWYFFTLPAFLGSQTFLDSYILFSLLAAFLSIGLLTWAFSTGGTAWKHGRNSRGLVPIPGPRGLPIFGSLFSLSRGLAHRTLA SLAWSRANTQLMAFSLGTSTPLVVASDPHTAKEILTSPSFADRPIKQSAKSLMFSRAIGFAPNGVYWRLLRRIASAHLFSPRRISAHEGLRKVECTAMLR GVAREMEVKGRVELRSHLQLASLSNIMGSVFGKRYDAAENSEELERLKEMVREGFELLVAFNWSDYLPWLSMFYDPYRIHERCLKLVPRVKQLVKGIIEE HRCRMVNGPTPEYSGTDTGDFVDVLLSLDGEEKLQEDDMIAVLWEMIFRGTDTTALLTEWVMAELVLHPEIQHKLRVELQNVTSEGGLLTEADLAKSSYL QAVVKETLRVHPPGPLLSWARLSTSDVQLSNGMLIPANTTAMVNMWAITHDPNVWTDPLEFRPERFMVEGGDVDVRGGDLRLAPFGAGRRVCPGKNLGMV TVGLWVAKLVTGFEWSEDGSQPVELGEVLKLSCEMKHPLQAVAVALE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	0	1
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	1.0	0.9991
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10027123 [exp]	2.0	0.9950
AT5G01660			unknown protein		Lus10018307 [exp]	2.4	0.9950
					Lus10002045 [exp]	4.5	0.9900
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	4.5	0.9901
AT5G59790			Domain of unknown function (DU...		Lus10005442 [exp]	4.7	0.9831
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10002046 [exp]	4.9	0.9892
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018194 [exp]	5.3	0.9883
AT5G66440			unknown protein		Lus10025994 [exp]	6.9	0.9827
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10001540 [exp]	7.1	0.9832

Compare expression of checked genes

Lus10035844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.