Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64860 809 / 0 DPE1 disproportionating enzyme (.1) AT2G40840 103 / 9e-23 DPE2 disproportionating enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036626 [exp] 561 / 0 AT5G64860 482 / 1e-165 disproportionating enzyme (.1) Lus10036628 [exp] 201 / 2e-61 AT5G64860 136 / 3e-38 disproportionating enzyme (.1) Lus10031010 [exp] 102 / 2e-22 AT2G40840 1063 / 0.0 disproportionating enzyme 2 (.1) Lus10035408 [exp] 92 / 6e-19 AT2G40840 1078 / 0.0 disproportionating enzyme 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G081400 [exp] 839 / 0 AT5G64860 849 / 0.0 disproportionating enzyme (.1) Potri.006G031700 [exp] 111 / 2e-25 AT2G40840 1492 / 0.0 disproportionating enzyme 2 (.1) Potri.016G028900 [exp] 108 / 3e-24 AT2G40840 1481 / 0.0 disproportionating enzyme 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF02446 [flax] [poplar] Glyco_hydro_77 4-alpha-glucanotransferase
Representative CDS sequence Show only first row Show all	>Lus10035845 pacid=23147499 polypeptide=Lus10035845 locus=Lus10035845.g ID=Lus10035845.BGIv1.0 annot-version=v1.0 ATGGCAAAGCTCCATTCTATTTCGCTCTGTCATTCTCTATCTTCTCCCATCTCCTCCTCTCCTTTCTCCTTCGCCCCCGTATCCCATCTATTCAACGCCA TGATGTTCCGTCGCAGTTCGCCCGCCCCAGCATCCGTTGCCATGACTTCTGATACCTCATTCGCCTCTGTTGCCGTCGGCCAGAGCTTCCCCGACAACTA CGGCGACTGGCTACCCAAGCGTGATCTGGAGACTCGTAGAAGAGCTGGTGTTTTGCTTCATCCTACTTCCTTGAGAGGTCCTCAAGGTATTGGTGATTTT GGCCAGGAAGCGTTTCGGTTCGTCGATTGGCTGAGTGACACCGGTTGTTCCGTTTGGCAGGTTCTCCCTCTAGTTCCACCCGATGATGAGGGATCACCGT ACTCGGGCAAGGATGCTAATTGTGGTAACACCCTCTTGATTTCTCTTGAAGAACTTGTAAAGGATGGTTTGTTGTCGGAAGGCGAGCTCCCGGAATCCAT AAATGCCGAGCGTGTGGACTTCTCTGCTGCTACTAGACTGAAGGATCCATTGATAACCAAGGCTGCAGAGAGATTGGTTAAGAGTTGCTGTAAACTTAAA GGCCAGATGGATGTTTTTCGTAAAGACCCCAACATATCAAGTTGGCTTGAAGATGCAGCTTATTTTGCTGCAATTGACAACTCTATGAATACATTGGATT GGCATCAATGGCCTGAACCTTTGAAAAATTGCCATCTTGCAGCACTGGAAGAAATTTATGAACGCGAAAAGGACTTTATAGATATATTCATTGCACGGCA ATTCTTATTCCAGAGGCAGTGGCAGAAGCTTCGTGCATATGCTCAGCAGAAGGGAATTAGCATAATGGGAGACATGCCCATCTATGTAGGATATCATAGT GCTGATGTTTGGGCCAATAAAAAGCACTTTTTACTGGGCAAGAGTGGATTTCCTCTGCTGGTTAGTGGTGTTCCACCAGATGCCTTCAGTGAAACTGGTC AATTGTGGGGCAGCCCTTTATATGAATGGAAATCTATGGAAGAAGATGGGTTTTCATGGTGGGTAAGACGTATACGAAGGGCTCAAGATCTATATGATGA ATTCAGGATTGATCATTTTAGAGGTTTTGCTGGGTACTGGGCTGTTTCTTCTGAGGCTGAGATAGCAACAATTGGAAACTGGAAGGCAGGACCTGGAAAG TCCTTGTTTGATGTCATTTCCAGAGAAGTTGGTACCATCAAGATTATAGCTGAAGATCTGGGAGTAATTACTGAGGACGTAGTTGAGCTCAGGAGATCCA TTGGTGCCCCTGGAATGGCTGTGCTCCAGTTTGCTTTTGGAAGTGATGCAGACAACCCTCATTTGCCCCATAACCACGAGACAAATCAAGTTGTGTATAC TGGAACTCATGATAATGATACGATTCAAGGGTGGTGGGATGGTTTGCAGCAAGAAGAGAAGTTGAATGTGAGTTTCCCTGATATTTACTCATTGAATCAT AAGCCTTCCATACACCAACTAGCACACAGAATTCAGCAGTTGGCTGAGTTAAAAGGAAGCCCATATTTGTTTAACATTACTGCATTTTATGTATTGAAGG TGTTGCGGTACACTTCAATCACCGAGGAAGATGACATCCCATGGGCACTAATCCGTACTGCACTGTCGTCAGTTGCTCGAACAGCAATTATACCGATGCA AGATATTCTTGGGCTAGGGAATTCTGCTAGGATGAACATTCCTGCAACCCAGAGTGGAAACTGGAGTTGGAGGATGCCAAGTTCCCAGAGTTTCGATCAG CTTGGCAAGGAATCAAAAAGGCTACATGATTTGCTTTCCATGTATGGAAGGCTGTAG
AA sequence Show only first row Show all	>Lus10035845 pacid=23147499 polypeptide=Lus10035845 locus=Lus10035845.g ID=Lus10035845.BGIv1.0 annot-version=v1.0 MAKLHSISLCHSLSSPISSSPFSFAPVSHLFNAMMFRRSSPAPASVAMTSDTSFASVAVGQSFPDNYGDWLPKRDLETRRRAGVLLHPTSLRGPQGIGDF GQEAFRFVDWLSDTGCSVWQVLPLVPPDDEGSPYSGKDANCGNTLLISLEELVKDGLLSEGELPESINAERVDFSAATRLKDPLITKAAERLVKSCCKLK GQMDVFRKDPNISSWLEDAAYFAAIDNSMNTLDWHQWPEPLKNCHLAALEEIYEREKDFIDIFIARQFLFQRQWQKLRAYAQQKGISIMGDMPIYVGYHS ADVWANKKHFLLGKSGFPLLVSGVPPDAFSETGQLWGSPLYEWKSMEEDGFSWWVRRIRRAQDLYDEFRIDHFRGFAGYWAVSSEAEIATIGNWKAGPGK SLFDVISREVGTIKIIAEDLGVITEDVVELRRSIGAPGMAVLQFAFGSDADNPHLPHNHETNQVVYTGTHDNDTIQGWWDGLQQEEKLNVSFPDIYSLNH KPSIHQLAHRIQQLAELKGSPYLFNITAFYVLKVLRYTSITEEDDIPWALIRTALSSVARTAIIPMQDILGLGNSARMNIPATQSGNWSWRMPSSQSFDQ LGKESKRLHDLLSMYGRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64860		DPE1	disproportionating enzyme (.1)		Lus10035845 [exp]	0	1
AT5G26670			Pectinacetylesterase family pr...		Lus10000269 [exp]	9.7	0.8327
AT4G29330		DER1	DERLIN-1 (.1)		Lus10034990 [exp]	10.2	0.7965
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	13.1	0.8408
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	18.0	0.8212
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10014312 [exp]	19.6	0.7859
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10022398 [exp]	24.8	0.8121
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10014952 [exp]	25.1	0.7809
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	26.3	0.8128
AT3G18500			DNAse I-like superfamily prote...		Lus10014775 [exp]	27.4	0.8148
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10042817 [exp]	32.7	0.7262

Compare expression of checked genes

Lus10035845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.