Plant FIBer expression Database

Lus10035846 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G21970 176 / 1e-55 SEP2 stress enhanced protein 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036629
[exp]
327 / 2e-115 AT2G21970 196 / 5e-64 stress enhanced protein 2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G084200
[exp]
209 / 4e-69 AT2G21970 197 / 2e-64 stress enhanced protein 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00504 Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence
>Lus10035846 pacid=23147517 polypeptide=Lus10035846 locus=Lus10035846.g ID=Lus10035846.BGIv1.0 annot-version=v1.0
ATGGCCATAACAATGGCGCGTGTGATCCGTTGCGAACTCCGTGCTGCGGGCAACCGACCAGCCGTTGCGAACACCGGATCTGTAGCTCCGCTACAGCTCG
TGTCGGTGCCGCAGACGACGTCGGAGAACCAGAACAGGAAGATACTCCTGCAGCCTCGACTGTGTACTCTGAGATCATACGGAGAAGATCGGTTCGGAGT
TGTGAAGAGGAAAAAGGACGGAAGTGGCCCGGTCGGAGGAGGGGAATATGAGGTGTCGAGGTTCTTTGAAACTTTATCGGAGTACATCGAGAGCTCCAAG
AAGAGCCAGGATTTTGAGATCATCTCAGGCCGATTCGCTATGATCGTATTCGCGGCGACGGTGGTGTCAGAGGTGGTGACGGGGAACTCGGCGCTGAGGA
AGCTGGATTTGGTGGGAATCGAGGAAGCCGGCTGCGCGTGTTTGGGAGCGGTGGTTTTTGCGGCGGTATTCGCGTGGTTCTCAAGTGCGAGAAACAGAGT
GGGGAAGATATTGACCTTCCGATGCAACTCGTTCATCGACTCGCTCATCGACGATATCGTCGATGGCCTGTTCTACGAGACGGAACTCAGCGACTGGTCT
GATGAAATATGA
AA sequence
>Lus10035846 pacid=23147517 polypeptide=Lus10035846 locus=Lus10035846.g ID=Lus10035846.BGIv1.0 annot-version=v1.0
MAITMARVIRCELRAAGNRPAVANTGSVAPLQLVSVPQTTSENQNRKILLQPRLCTLRSYGEDRFGVVKRKKDGSGPVGGGEYEVSRFFETLSEYIESSK
KSQDFEIISGRFAMIVFAATVVSEVVTGNSALRKLDLVGIEEAGCACLGAVVFAAVFAWFSSARNRVGKILTFRCNSFIDSLIDDIVDGLFYETELSDWS
DEI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G21970 SEP2 stress enhanced protein 2 (.1) Lus10035846
[exp]
0 1
AT1G77090 Mog1/PsbP/DUF1795-like photosy... Lus10018931
[exp]
3.0 0.9380
AT2G21970 SEP2 stress enhanced protein 2 (.1) Lus10036629
[exp]
3.5 0.9139
AT4G09350 NdhT, CRRJ NADH dehydrogenase-like comple... Lus10029740
[exp]
5.1 0.9320
AT5G67370 Protein of unknown function (D... Lus10011087
[exp]
5.5 0.9233
AT4G31870 ATGPX7 glutathione peroxidase 7 (.1) Lus10026887
[exp]
5.9 0.9181
AT5G43260 chaperone protein dnaJ-related... Lus10037022
[exp]
6.0 0.8924
AT5G49740 ATFRO7, FRO7 ferric reduction oxidase 7 (.1... Lus10012161
[exp]
6.3 0.9120
AT4G27360 Dynein light chain type 1 fami... Lus10038566
[exp]
6.3 0.9079
AT1G79510 Uncharacterized conserved prot... Lus10009597
[exp]
7.2 0.9218
AT3G23400 FIB4 fibrillin 4, Plastid-lipid ass... Lus10011803
[exp]
7.9 0.8873

Lus10035846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.