Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21990 299 / 1e-101 Protein of unknown function, DUF617 (.1) AT4G39610 290 / 4e-98 Protein of unknown function, DUF617 (.1) AT5G06990 224 / 3e-72 Protein of unknown function, DUF617 (.1) AT5G42680 182 / 4e-56 Protein of unknown function, DUF617 (.1.2) AT2G41660 167 / 1e-49 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT3G25640 160 / 3e-47 Protein of unknown function, DUF617 (.1) AT5G23100 155 / 4e-45 Protein of unknown function, DUF617 (.1) AT2G37880 138 / 6e-39 Protein of unknown function, DUF617 (.1) AT5G65340 133 / 4e-37 Protein of unknown function, DUF617 (.1) AT1G21050 132 / 6e-37 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036630 [exp] 486 / 3e-174 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1) Lus10021759 [exp] 176 / 3e-53 AT5G42680 254 / 3e-85 Protein of unknown function, DUF617 (.1.2) Lus10034386 [exp] 167 / 8e-50 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 167 / 3e-49 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 164 / 1e-48 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10008672 [exp] 162 / 2e-48 AT5G06990 162 / 5e-54 Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 164 / 7e-48 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 155 / 2e-45 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10000863 [exp] 154 / 9e-45 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G084000 [exp] 296 / 1e-100 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 238 / 2e-77 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 236 / 9e-77 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.002G128800 [exp] 197 / 6e-62 AT5G42680 269 / 2e-91 Protein of unknown function, DUF617 (.1.2) Potri.014G035000 [exp] 196 / 1e-61 AT5G42680 286 / 2e-98 Protein of unknown function, DUF617 (.1.2) Potri.006G048800 [exp] 192 / 2e-59 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.016G056800 [exp] 186 / 2e-57 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 185 / 7e-57 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 184 / 1e-56 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 182 / 7e-56 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10035847 pacid=23147659 polypeptide=Lus10035847 locus=Lus10035847.g ID=Lus10035847.BGIv1.0 annot-version=v1.0 ATGGTGGGTTTGTTTGTACAATTTAGAAAGCCAAAACATCGGATCACAATCTCCCCCCAACACACACAACTCCCTGCCCACAGGGAAAGGAGTCGTCGCC TATTCTCTCCTCCTCCCCACAACTATACTTCATTTCCCTCAATCTGCCTTCACCGGCCGGACGATCGACCTTCTAATGGCAAGCTTCTCCTCCTCCTCCT CCTGCCTCCATTAATGGGTGACCAAACTACAACGACCCCTCCTCGCAGCAGCAACGTTGACAACGAAACCTCCTCCCAACAATCCCAAACTAGTCCAACT CCTCCGCCCCTCCCCGTCTCCCTCCTCCAGCCATCACCCAACAAGAAGAAGTCAAAGCCCAAGGTAATCCGCGTCTTCCGCTCCGTCTTACGCTCCTTCC CTATCATCGCCCCCGTCTGCAAAATGCCAACTGTCCTCTCCGCTGGCTTCTCCGATGGACCCCACCACCGGGGCGGGGTCTCGGGCACCCGGATCACCGG AACCTTGTTCGGCTACCGGAAGGGCCGGGTCAGCCTCTCGATCCAGGACAACCCGAAGTGCTTGCCGTCTGCGGTGGTGGAGCTAGCGATGCAGACCAAC GTCCTACAGAAGGAACTCGGGTCGGGCATGCTCCGAATAGCGCTAGAATGCGAGAAGCGGGCGTTGGATCCGAAAGATGCGAAAGAGGGGAAGTTGTTGC TGGAAGAGCCGATGTGGACGATGTACTGCAACGGGAAGAAGACGGGGTACGGGGTGAAGAGGGAGGCGACGTCGGAGGATTTGCAGGTGATGGAATTGCT CAAGGCGGTGTCGATGGGGGCCGGGGTTTTGCCTGGGAATTCCGAGACGGAAGGGGCTGAAGGTGAGCTGGCGTATATGCGGGCCTACTTTGAAAGGGTC GTGGGCTCTAAGGATTCGGAGACGCTTTACATGTTGAGCCCAGAAGGCAACAATGGGCCTGAGCTCACTATTTTTTTCGTACGGGTATGA
AA sequence Show only first row Show all	>Lus10035847 pacid=23147659 polypeptide=Lus10035847 locus=Lus10035847.g ID=Lus10035847.BGIv1.0 annot-version=v1.0 MVGLFVQFRKPKHRITISPQHTQLPAHRERSRRLFSPPPHNYTSFPSICLHRPDDRPSNGKLLLLLLLPPLMGDQTTTTPPRSSNVDNETSSQQSQTSPT PPPLPVSLLQPSPNKKKSKPKVIRVFRSVLRSFPIIAPVCKMPTVLSAGFSDGPHHRGGVSGTRITGTLFGYRKGRVSLSIQDNPKCLPSAVVELAMQTN VLQKELGSGMLRIALECEKRALDPKDAKEGKLLLEEPMWTMYCNGKKTGYGVKREATSEDLQVMELLKAVSMGAGVLPGNSETEGAEGELAYMRAYFERV VGSKDSETLYMLSPEGNNGPELTIFFVRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21990			Protein of unknown function, D...		Lus10035847 [exp]	0	1
AT3G27250			unknown protein		Lus10014610 [exp]	2.2	0.8004
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10017201 [exp]	3.5	0.7536
AT3G15810			Protein of unknown function (D...		Lus10038097 [exp]	7.3	0.7503
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10036178 [exp]	11.7	0.7887
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019882 [exp]	13.3	0.7413
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10033665 [exp]	14.7	0.7064
AT2G46640			unknown protein		Lus10005993 [exp]	17.2	0.7748
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10001347 [exp]	19.7	0.7611
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014164 [exp]	19.7	0.7067
AT1G64160			Disease resistance-responsive ...		Lus10017539 [exp]	21.0	0.7664

Compare expression of checked genes

Lus10035847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.