Plant FIBer expression Database

Lus10035848 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64880 58 / 5e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G083900
[exp]
107 / 6e-30 AT5G64880 62 / 2e-12 unknown protein
Potri.007G081700
[exp]
74 / 3e-17 AT5G64880 57 / 7e-11 unknown protein
PFAM info
Representative CDS sequence
>Lus10035848 pacid=23147632 polypeptide=Lus10035848 locus=Lus10035848.g ID=Lus10035848.BGIv1.0 annot-version=v1.0
ATGTTTGATTTCGGCGACGAGCTTACAATCCAGAGCTACAGGATTCCATGGCTAATCTGGACTCAGATTCTGGTTCTCCTCCTCCTCATCTTCCTCCTCT
ACTGTTTCAGCTTCGACGATGAATCAAACGCCTCTTCCTCCTCCTCCACCGCTTCCTCATCCACCTCCGATGGATGCAGCCGAGATCTGGATCACAAGTT
GCTTCTGAAAAAGTGCGTCGGGAATACTCCAACCACCGTCACCGATTACGTTCACCACTGTCAGGTAATCGGAAGCCAAAGTATAAAGGGGGAGATGGCA
ACTATGACGGGCAGAAGAATAGAGAGGGAAGATTTCGCAGAAGGAGACTCAATTACAGTCTACCATCCTTGCAACTACTTTAGGCTCGCAAAACTGGCAT
TTCTTAAATGTTTGGGGTTAGACTGTGAACCGGAGAGATCTTTGAATACAGAGGAGAAGAAGAAGAAAAGAAGATAA
AA sequence
>Lus10035848 pacid=23147632 polypeptide=Lus10035848 locus=Lus10035848.g ID=Lus10035848.BGIv1.0 annot-version=v1.0
MFDFGDELTIQSYRIPWLIWTQILVLLLLIFLLYCFSFDDESNASSSSSTASSSTSDGCSRDLDHKLLLKKCVGNTPTTVTDYVHHCQVIGSQSIKGEMA
TMTGRRIEREDFAEGDSITVYHPCNYFRLAKLAFLKCLGLDCEPERSLNTEEKKKKRR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G64880 unknown protein Lus10035848
[exp]
0 1
AT4G33920 Protein phosphatase 2C family ... Lus10013896
[exp]
13.0 0.8187
AT5G38700 unknown protein Lus10010019
[exp]
13.1 0.7613
AT2G32260 ATCCT1 phosphorylcholine cytidylyltra... Lus10027337
[exp]
13.3 0.8087
AT5G24590 NAC TIP, ANAC091 Arabidopsis NAC domain contain... Lus10015587
[exp]
16.2 0.8127
AT3G08720 ATPK2, ATPK19, ... ARABIDOPSIS THALIANA SERINE/TH... Lus10025213
[exp]
17.3 0.7721
AT1G59710 Protein of unknown function (D... Lus10030804
[exp]
17.7 0.8059
AT1G53400 Ubiquitin domain-containing pr... Lus10029264
[exp]
18.3 0.7912
AT3G28180 ATCSLC4, CSLC4,... CELLULOSE-SYNTHASE LIKE C4, Ce... Lus10039475
[exp]
21.5 0.7716
AT4G13450 Adenine nucleotide alpha hydro... Lus10014459
[exp]
22.7 0.7810
AT3G53810 Concanavalin A-like lectin pro... Lus10016506
[exp]
23.0 0.7945

Lus10035848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.