Plant FIBer expression Database

Lus10035849 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G39630 224 / 5e-74 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036631
[exp]
461 / 7e-167 AT4G39630 221 / 4e-72 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G082500
[exp]
246 / 1e-82 AT4G39630 228 / 1e-75 unknown protein
Potri.007G085100
[exp]
246 / 2e-82 AT4G39630 219 / 7e-72 unknown protein
PFAM info
Representative CDS sequence
>Lus10035849 pacid=23147404 polypeptide=Lus10035849 locus=Lus10035849.g ID=Lus10035849.BGIv1.0 annot-version=v1.0
ATGCCGAAGCGGAGAGCTAAGAGGATCGTTAAGCAACAAGCTACGCCATCGGTAGAACCTGATGTATACGGAACTGAGTTGCCACCAGTTGAAGAAAAGC
TAGCGTCACCATTTCACCATGAAGTTGAGCGTCAGATTGCAGCAATTAGAGCTATTCGTGATATGGAGATCGAACGTTCATTAACTGCTTTGCGTCTGGT
ACGATCGTATTTTACCGAAGAACAACTGGACACTCTAGTTCTTCAATTTCTCAAGGAGAATCTTCCAAACTTGTCCATTGTAAAGCACGATGAAAACGGT
CACTTTGAACTGCAATGGAAAGACAAAGATGACAATTTGTCTTTGACTCGAGTAGCTGGTGGAGAAGAGCTACACGCTTCTCTTCTAGGTGGTTTGTCCA
TGGCTTATCCTAACTGCTCTGCCATTGGATCTCTAGGTGCTCTTGAGTTACCTACAGATGCAGTGAGAGCAACTCTATTTGGAACTGATTGCATGCAGAT
GAAGGACTTTATTTTGGAGGTTCCATCAGATTCTGAGATGCTTTCGACACAAGATGGTCTTCAAACACCTGGGGCCACTAGTCAGAGACTTTCTGTGGGG
ATGACACCCAAAACTCTAAGACTGCCTAAGCCTGGAGAAATGCTTCTTTCTGTTCGTGGATCACCCCTTGGTGTCTATAAAGAAGACAACATGGAAGCAA
TCAGAGGTATGCGTTAG
AA sequence
>Lus10035849 pacid=23147404 polypeptide=Lus10035849 locus=Lus10035849.g ID=Lus10035849.BGIv1.0 annot-version=v1.0
MPKRRAKRIVKQQATPSVEPDVYGTELPPVEEKLASPFHHEVERQIAAIRAIRDMEIERSLTALRLVRSYFTEEQLDTLVLQFLKENLPNLSIVKHDENG
HFELQWKDKDDNLSLTRVAGGEELHASLLGGLSMAYPNCSAIGSLGALELPTDAVRATLFGTDCMQMKDFILEVPSDSEMLSTQDGLQTPGATSQRLSVG
MTPKTLRLPKPGEMLLSVRGSPLGVYKEDNMEAIRGMR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G39630 unknown protein Lus10035849
[exp]
0 1
AT4G01270 RING/U-box superfamily protein... Lus10018817
[exp]
13.2 0.8296
AT1G67630 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA pol... Lus10015820
[exp]
19.9 0.8258
AT3G19184 B3 AP2/B3-like transcriptional fa... Lus10032315
[exp]
23.0 0.8042
AT5G42700 B3 AP2/B3-like transcriptional fa... Lus10006483
[exp]
23.7 0.8005
AT2G19490 recA DNA recombination family ... Lus10017151
[exp]
27.2 0.7919
AT4G18820 AAA-type ATPase family protein... Lus10029265
[exp]
35.6 0.7560
AT1G09200 Histone superfamily protein (.... Lus10031250
[exp]
45.3 0.8189
AT3G61740 SDG14, ATX3 SET domain protein 14 (.1.2) Lus10004012
[exp]
46.0 0.8201
AT2G34190 Xanthine/uracil permease famil... Lus10029238
[exp]
49.0 0.8139
AT5G04250 Cysteine proteinases superfami... Lus10037388
[exp]
58.3 0.7894

Lus10035849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.