Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39620 580 / 0 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G06430 176 / 4e-49 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48730 159 / 7e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53170 157 / 4e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G41720 152 / 3e-39 EMB2654 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G74850 149 / 2e-38 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT5G02860 147 / 1e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18900 140 / 2e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT1G74750 139 / 5e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06710 134 / 4e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036632 [exp] 410 / 2e-143 AT4G39620 215 / 2e-67 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036633 [exp] 362 / 8e-125 AT4G39620 218 / 9e-69 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10000862 [exp] 168 / 2e-46 AT3G06430 644 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028683 [exp] 166 / 3e-45 AT3G06430 640 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027552 [exp] 159 / 4e-43 AT3G06430 501 / 1e-175 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022787 [exp] 157 / 5e-42 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 155 / 2e-41 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024893 [exp] 151 / 4e-40 AT3G53170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033110 [exp] 151 / 6e-39 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G082400 [exp] 672 / 0 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G153900 [exp] 170 / 5e-47 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G098700 [exp] 166 / 1e-45 AT3G06430 692 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G243600 [exp] 154 / 6e-41 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G058300 [exp] 150 / 5e-40 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G123900 [exp] 154 / 1e-39 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G036400 [exp] 147 / 1e-37 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G069100 [exp] 146 / 4e-37 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.012G123600 [exp] 142 / 2e-36 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G046100 [exp] 142 / 5e-36 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10035850 pacid=23147682 polypeptide=Lus10035850 locus=Lus10035850.g ID=Lus10035850.BGIv1.0 annot-version=v1.0 ATGGCGCTCTTTCACATCTCACCCTTCCATACCCTCCATATTGGTTCAATTGACAATCTCAAACTTCCATTGCAGCGACAACGACAGCTTCCCTTCTGCG TCGCCTGCGTCTCGACGACGAAATCCAAACCGAAGAGGAAATTTTCCCCGGACATCGAGAAAGCCGAATCGGAGGAGTTAGTTCGCAGCATTGTGAGGAG CTTTACGGAGAAAGAGTCCCTGTCAAAGACACTGAACAAATACGTCAGAATTGTCCGTACCCAGCACTGCTTTATGCTCTTCGAAGAGCTTGGAAGGAAG GGCAAGTGGCTTCAATGTCTCGAGGTGTTCAGATGGATGCAGAAACAGCGATGGTACATAGCCGATAATGGCGTATACTCCAAGCTGATATCCGTAATGG GGAAGCATGGACAAATCCGGATGGCAATGTGGCTTTTCTCAGAGATGCGTAACAGTGGATGTCGTCCCGATACTTCCGTCTACAATTCTCTGATATCAGC CCACTTGCATTCCAGGGACAAATCCAAAGCTCTAACCAAGGCACTTGGTTACTTCGACAAGATGAAAGCTCTTGAAAGGTGCAAGCCCAATGTTATCACA TATAACATCCTCTTGCGAGCTTGTGCACTTGCTCGGGATGTCAATCGAGTTAACGACATGTTCAAAGAACTCGAGGGCAGTAGCACAGTATCCCCTGACA TCTATACATATAACGGTGTTATGGATGCATATGGAAAGAATGGGATGATTGGAGAGATGGAATCCGTGCTCTCCCTCATGAAGGCGAATCATTGTAAGCC GGACATCATCACTTTCAACTTGCTGATTGATTCGTATGGCAGAAAGCAGCAATTTGCTAAGATGGAACAAGTTTTCCAGAGCTTGCTGCAATCCAAGGAG AAGCCAACTCTTCCTACGTTTAATTCTATGATAATCAACTATGGAAAGGCACGACAGAGAGACAGAGCGCAGGACGTGTTCAACAAGATGAATGATTTGA AATATACACCGAGTTTCATTACCTACGAGAGTCTTATCATGATGTATGGATTTTGTGATTGTGTCACTAATGCCAGAGGGGTATTTGACTCCATGGTTGA ATCTGGGAAGGAGGTCAGAGTTTCGACTTTGAACGCCATGCTTGATGTTTACTGCATGAATAAGCTGCACATTGAAGCACACTCCCTTGTCGAAAGTGCA CGGGGTCTTGGGGTGTCCCCGGATTCATCTACGTATAAGCTTCTTTATAAGGCCTACACTAAAGCTAATAACAAAGAGCTCGTACAGAAATTGATCAAGC GTATGGAGAAAGATGGTATCGTCGTCCACGATAGTAAATTCTTCCTAGATGCCTTGGGAGCTTCTCAACCTTCTAAACCAGAAGGTTCAGCTTCTAACAA GGATGCCTGGAGATCACATAATTCACAACAGAGTCTGAAGAAAACTGGCCCGAAACTTACAACCAGCCCGGTTAAGACGCATAGCTCTGTGAGAAGATGA
AA sequence Show only first row Show all	>Lus10035850 pacid=23147682 polypeptide=Lus10035850 locus=Lus10035850.g ID=Lus10035850.BGIv1.0 annot-version=v1.0 MALFHISPFHTLHIGSIDNLKLPLQRQRQLPFCVACVSTTKSKPKRKFSPDIEKAESEELVRSIVRSFTEKESLSKTLNKYVRIVRTQHCFMLFEELGRK GKWLQCLEVFRWMQKQRWYIADNGVYSKLISVMGKHGQIRMAMWLFSEMRNSGCRPDTSVYNSLISAHLHSRDKSKALTKALGYFDKMKALERCKPNVIT YNILLRACALARDVNRVNDMFKELEGSSTVSPDIYTYNGVMDAYGKNGMIGEMESVLSLMKANHCKPDIITFNLLIDSYGRKQQFAKMEQVFQSLLQSKE KPTLPTFNSMIINYGKARQRDRAQDVFNKMNDLKYTPSFITYESLIMMYGFCDCVTNARGVFDSMVESGKEVRVSTLNAMLDVYCMNKLHIEAHSLVESA RGLGVSPDSSTYKLLYKAYTKANNKELVQKLIKRMEKDGIVVHDSKFFLDALGASQPSKPEGSASNKDAWRSHNSQQSLKKTGPKLTTSPVKTHSSVRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10035850 [exp]	0	1
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036632 [exp]	1.0	0.9565
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023515 [exp]	4.2	0.9443
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10014577 [exp]	4.2	0.9519
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	4.2	0.9539
AT5G55580			Mitochondrial transcription te...		Lus10003775 [exp]	4.5	0.9454
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10032109 [exp]	5.7	0.9396
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10010174 [exp]	7.9	0.9395
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10043079 [exp]	10.0	0.9447
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036633 [exp]	10.5	0.9369
AT3G02450			cell division protein ftsH, pu...		Lus10003049 [exp]	11.0	0.9321

Compare expression of checked genes

Lus10035850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.