Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64010 167 / 4e-51 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036635 [exp] 248 / 1e-83 AT5G64010 124 / 9e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064800 [exp] 275 / 5e-93 AT5G64010 197 / 3e-63 unknown protein Potri.005G064951 [exp] 275 / 6e-93 AT5G64010 197 / 3e-63 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035852 pacid=23147420 polypeptide=Lus10035852 locus=Lus10035852.g ID=Lus10035852.BGIv1.0 annot-version=v1.0 ATGGGGTTTGAAGAGTTCGAATCCATTTTTGGTGAACCGAAAGCCGGATGGGCCAAAAACTTAGACCTCGGCGGTTCTGCACCTCTCCGGAGATTCTTGA TGCATGTTTTTGCTCCTGACTATTACCACCTCAAGATTCAAGTGACTGATTACAGCTCCTTTACCTTTGAAGCCTTCAACTCCCTGTCGCAGCTCGAAGA CATGAGAGACAGCATTGGAATTGGTGGCTCATGGCCTGAGTTTGTTCATTATCTCATATCTTCCCTTAAAGCTGAAGATGTAAAGCTTGTCCTGGAGAAG CAATCGGGTAGCAATGGTGTTGTATCTGCACGATTAGTTTGTCAGAAATCGAAAGGAATGCCTTTAATCTCCATTTCTCTCAGAAGAGTTTTGGACTCTG ATGCAAATGATGCCATGGCGAATATCTCCTTTGGGCTTTTCAAGGCATTCAAGTGTTCTCCGAAGATAATGCTACAAGGAGAAGGGAATTCTTTGCACTC GATGAAAGGAATAGTGACGGAGAAGGAAAACAAAGAAAAAGTCGAAAGCCAATTCGGAAAGAGGAAGAAACTCAGAGAATTAGATGCTTCCGACGAAGCT GCAGCATCTGGCGTAGCGAGCAATGGGTCTCCAAATTCACCAGGGAAACAAGAAACTCGAACTGTTGCAACACCCAAAAAGGCCAACAATCGGGTCGTTC CAGCGCATCGCAGATTACAGGCAGGGTTCACTACGAGCCGGACCTGGAATGTGTTTTGCATACAATCACCGATTCTAAACGTGGCTTTGGGTTTACACGC CGGACATTGGATACGTGACCGGCCAGACTGA
AA sequence Show only first row Show all	>Lus10035852 pacid=23147420 polypeptide=Lus10035852 locus=Lus10035852.g ID=Lus10035852.BGIv1.0 annot-version=v1.0 MGFEEFESIFGEPKAGWAKNLDLGGSAPLRRFLMHVFAPDYYHLKIQVTDYSSFTFEAFNSLSQLEDMRDSIGIGGSWPEFVHYLISSLKAEDVKLVLEK QSGSNGVVSARLVCQKSKGMPLISISLRRVLDSDANDAMANISFGLFKAFKCSPKIMLQGEGNSLHSMKGIVTEKENKEKVESQFGKRKKLRELDASDEA AASGVASNGSPNSPGKQETRTVATPKKANNRVVPAHRRLQAGFTTSRTWNVFCIQSPILNVALGLHAGHWIRDRPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64010			unknown protein		Lus10035852 [exp]	0	1
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	4.2	0.8887
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10003092 [exp]	6.7	0.8693
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10004374 [exp]	12.6	0.8768
AT5G52580			RabGAP/TBC domain-containing p...		Lus10027697 [exp]	14.7	0.8498
					Lus10009362 [exp]	16.9	0.8816
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	24.1	0.8635
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10018749 [exp]	27.0	0.8708
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10024580 [exp]	27.1	0.8555
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	30.2	0.8589
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Lus10030981 [exp]	31.5	0.8078

Compare expression of checked genes

Lus10035852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.