Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64940 1009 / 0 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT3G07700 503 / 2e-170 Protein kinase superfamily protein (.1.2.3) AT1G79600 238 / 6e-69 Protein kinase superfamily protein (.1) AT5G24970 237 / 4e-68 Protein kinase superfamily protein (.1.2) AT4G31390 216 / 6e-61 Protein kinase superfamily protein (.1.2) AT1G71810 214 / 3e-60 Protein kinase superfamily protein (.1) AT3G24190 192 / 7e-52 Protein kinase superfamily protein (.1) AT2G39190 186 / 6e-50 ATATH8 Protein kinase superfamily protein (.1.2) AT5G24810 170 / 3e-44 ABC1 family protein (.1.2) AT1G65950 157 / 4e-41 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036636 [exp] 1192 / 0 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10006363 [exp] 510 / 1e-172 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012317 [exp] 507 / 1e-166 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035701 [exp] 242 / 7e-70 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10020103 [exp] 229 / 2e-65 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10017924 [exp] 195 / 2e-53 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10036522 [exp] 189 / 1e-50 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020152 [exp] 185 / 8e-50 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041406 [exp] 185 / 2e-49 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G083200 [exp] 1066 / 0 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.007G082500 [exp] 1051 / 0 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.014G168600 [exp] 498 / 5e-168 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G000100 [exp] 234 / 1e-67 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.018G014000 [exp] 220 / 2e-62 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G061000 [exp] 217 / 6e-61 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.010G221000 [exp] 209 / 8e-58 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G275600 [exp] 204 / 7e-57 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G050700 [exp] 188 / 2e-50 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.004G075100 [exp] 156 / 2e-40 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10035853 pacid=23147529 polypeptide=Lus10035853 locus=Lus10035853.g ID=Lus10035853.BGIv1.0 annot-version=v1.0 ATGGATGGTGGAAGTAACGGCAGCTTGACGAAGTACGATAATGGGAATGGAAGTGCTTCTGCAGCTGAGAAAGCGGCAGAGGCTGTGGAAGATGGGAGGA AGAAGCGAATAGAGGAGGTTGGGAAAGAAGATGCCTGGTTTAAGCGAGCTGGTAACGGGCAGGTTGAGGTTTCTGTTGTACCTGGGGGCCGCTGGAATAG ATTCAAAACCTATTCCACCATCCAAAGAACTCTTGAAATTTGGGGAAATGTCTTTGCTTTCATCTTTAAGGTTTGGTTGAACAATCAGAAATTCGCTTAC CGAGGGGGGATGACAGAGGAGAAGAAAATTGTGAGGAGGAAGGCACTTGCTAAGTGGCTAAAGGAAAGTATTCTGAGACTTGGTCCTACATTCATCAAAA TAGGCCAGCAGTTCTCCACAAGAGTTGACATCCTTGCTCAAGAATATGTTGATCAATTGTCGGAACTTCAGGATCAAGTTCCCCCTTTCCCATCCGAGAC TGCTGTTTCTATAGTTGAAGAAGAGCTTGGAGCACCGGTGGAGGATATCTTTGATAGATTTGATTATGAACCAATTGCCGCTGCAAGTCTTGGTCAGGTT CACCGTGCGAGACTCAAAGGGCAGGAAGTTGTTATTAAAGTCCAACGGCCCGGTCTAAAAGATCTTTTCGATATTGATCTCAAGAATTTGAGGGTCGGTA TTCTGAGCGATGGAACATTCTCGTTCTCTTGGTCACACATGAATGAACATGATGGCTGTTCGTTTCAGGTAATAGCAGAATATCTTCAGAAGGTCGACCC AAAGTCAGATGGAGCGAAGAGAGATTGGGTTGCAATTTACGACGAGTGTGCAAATGTATTGTATCAGGAGATTGATTACACCAAAGAAGCTGCCAATGCA GAGCTATTTGCTAGCAATTTCAAGGATATGTCATATGTTAAAGTACCGAACATTGTTTGGGAATACACAACGCCTCAGGTCCTAACGATGGAGTATGTCC CTGGGATCAAAATAAATAAAGTAAAGGCTTTAGATCAGCTGGGTCTTGATCGCAAGAGATTAGGCCGATATGCTGTTGAATCTTACTTGGAGCAAATTCT TTCGCATGGATTTTTTCATGCTGATCCGCACCCAGGAAACATTGCTGTTGATGATGTCGATGGTGGAAGATTGATCTTCTATGATTTTGGAATGATGGGA AGTATCAGTCCAAACATCAGAGAAGGGTTGCTGGAAGTATTCTATGGAGTTTACGAGAAGGATTCCGACAAGGTTCTTCAAGCGATGATCCAAATGGGTG TCCTTGTGCCTACTGGAGATATGACAGCTGTCAGACGTACTGCACAATTTTTCCTTAATAGTTTCGAAGAGCGTCTTGCTGCACAACGACGGGAGAGGGA AATTGCAAATGCAGAACTTGGGTTTAAAAAACCTTTGTCGAAGGAGGAAAAACTTGAGAAAAAGAAGCAGCGGTTGGCTGCTATAGGGGAAGATCTATTA TCCATAGCTGGAGATCAACCTTTTCGATTCCCTGCCACGTTTACATTTGTTGTAAGAGCATTTTCAGTCTTAGATGGCATTGGAAAAGGCCTTGACCCTC GGTTCGACATTACAGAAATTGCCAAACCGTATGCATTAGAACTGTTGAAGTTCCGGGAAGCAGGAGTTGAAGTAGTGGTGAAGGACCTGAGAAATAGATG GGATAGGCAGTCCCGTGCATTTTACAACTTGTTTAGACAGGCTGATAGAGTTGAAAAGCTTGCAGAAACTATACAAAGATTGGAGCAAGGTGATTTGAAG CTTAGAGTTCGAACCCTGGAGGCTGAGAGAGCTTTCCAGCGTGTTTCTACTGTTCAAGCTACAGTGGGAAGTGTACCAGCTACGATGGCATATGCAGTAT GTGCAATATTTACGTTGCAAGTAGTGATAGGAATTGTAAAGGTGAAGAAGTTAGACCAACGAGAACGATTAATAACAGGCACTGCTTAA
AA sequence Show only first row Show all	>Lus10035853 pacid=23147529 polypeptide=Lus10035853 locus=Lus10035853.g ID=Lus10035853.BGIv1.0 annot-version=v1.0 MDGGSNGSLTKYDNGNGSASAAEKAAEAVEDGRKKRIEEVGKEDAWFKRAGNGQVEVSVVPGGRWNRFKTYSTIQRTLEIWGNVFAFIFKVWLNNQKFAY RGGMTEEKKIVRRKALAKWLKESILRLGPTFIKIGQQFSTRVDILAQEYVDQLSELQDQVPPFPSETAVSIVEEELGAPVEDIFDRFDYEPIAAASLGQV HRARLKGQEVVIKVQRPGLKDLFDIDLKNLRVGILSDGTFSFSWSHMNEHDGCSFQVIAEYLQKVDPKSDGAKRDWVAIYDECANVLYQEIDYTKEAANA ELFASNFKDMSYVKVPNIVWEYTTPQVLTMEYVPGIKINKVKALDQLGLDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVDGGRLIFYDFGMMG SISPNIREGLLEVFYGVYEKDSDKVLQAMIQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREREIANAELGFKKPLSKEEKLEKKKQRLAAIGEDLL SIAGDQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVVVKDLRNRWDRQSRAFYNLFRQADRVEKLAETIQRLEQGDLK LRVRTLEAERAFQRVSTVQATVGSVPATMAYAVCAIFTLQVVIGIVKVKKLDQRERLITGTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10035853 [exp]	0	1
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	1.4	0.9647
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10039748 [exp]	2.0	0.9614
AT5G08720			unknown protein		Lus10035962 [exp]	3.9	0.9444
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10005365 [exp]	4.9	0.9202
AT5G08720			unknown protein		Lus10025701 [exp]	5.0	0.9399
AT5G58330			lactate/malate dehydrogenase f...		Lus10038668 [exp]	5.5	0.9392
AT5G21222			protein kinase family protein ...		Lus10023650 [exp]	7.3	0.9343
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	7.5	0.9366
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10010322 [exp]	8.5	0.9418
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Lus10040841 [exp]	9.4	0.9304

Compare expression of checked genes

Lus10035853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.