Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14540 176 / 3e-56 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT5G47640 170 / 1e-53 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT2G13570 166 / 7e-52 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT3G53340 163 / 4e-51 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT2G37060 162 / 1e-50 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT2G38880 157 / 1e-49 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT2G47810 152 / 4e-47 CCAAT NF-YB5 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) AT1G21970 145 / 2e-43 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1) AT5G47670 144 / 3e-43 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT1G09030 134 / 5e-40 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036637 [exp] 242 / 4e-82 AT4G14540 179 / 6e-58 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001177 [exp] 176 / 1e-55 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001751 [exp] 174 / 5e-55 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10022514 [exp] 172 / 3e-54 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10016616 [exp] 172 / 3e-54 AT4G14540 215 / 5e-72 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10033477 [exp] 172 / 1e-53 AT2G13570 211 / 4e-69 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10020899 [exp] 171 / 2e-53 AT2G13570 213 / 9e-70 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10023484 [exp] 166 / 3e-52 AT2G37060 211 / 9e-71 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10015058 [exp] 165 / 7e-52 AT2G37060 238 / 4e-81 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G083400 [exp] 180 / 5e-57 AT4G14540 190 / 1e-61 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.007G082200 [exp] 179 / 9e-57 AT4G14540 186 / 5e-60 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.014G167800 [exp] 176 / 6e-56 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.016G006100 [exp] 172 / 2e-54 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.001G367500 [exp] 171 / 4e-54 AT4G14540 210 / 2e-70 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.016G085000 [exp] 168 / 5e-53 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) Potri.006G005500 [exp] 167 / 1e-52 AT4G14540 208 / 2e-69 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.010G216600 [exp] 164 / 2e-51 AT2G37060 236 / 2e-80 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.008G044800 [exp] 163 / 4e-51 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.005G065300 [exp] 163 / 1e-50 AT2G13570 201 / 2e-65 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10035854 pacid=23147616 polypeptide=Lus10035854 locus=Lus10035854.g ID=Lus10035854.BGIv1.0 annot-version=v1.0 ATGGCCGGGAAAAGGTACCAGCAGAAGGGAATTAGCCACACGGGGAGCCCGACATCATCGGACGGTGGAAGCTCTTCCAACAACAAGGAACAAGATAGGT TCCTTCCTATAGCAAACGTCAGCAGGATCATGAAGAAGTCCCTTCCAGCCAACGCCAAGATATCCAAGGAGGCGAAGGAGTCCGTTCAAGAATGTGTCTC CGAGTTCATCAGCTTTGTCACCGGAGAAGCTTCCGACAGGTGCCAGCGGGAGAAGCGCAAGACCATCAACGGCGACGATCTCTTGTGGGCCATGACTACC TTGGGCTTCGACAACTACGTGGGCCCCTTGAAGGCCTACCTCGGCAAGTATCGCGACACTGAAGAAGGCGATACTGATGACGACGTCGTCGTTGAGGGTG TTTTCGACGACTCGACAATTAATAGCACTGCTTTTATTGGCGGCGCCGACCACCACCACTTTTACGGTGAGGTTGGCGGGCCCCGCCTCACTCATCATCT CAATTCGCATAACGGAGGTGCTACGTCGTTAGTTTACACGCTTGGAGTTGGAGGACAGTACCCTCCAGCTGTAAACGGTGCAAACGGCGGTATGGCGTCT GCTGCTCATCACGTCCATTCCGACAGAATTCATCAGTGGTAA
AA sequence Show only first row Show all	>Lus10035854 pacid=23147616 polypeptide=Lus10035854 locus=Lus10035854.g ID=Lus10035854.BGIv1.0 annot-version=v1.0 MAGKRYQQKGISHTGSPTSSDGGSSSNNKEQDRFLPIANVSRIMKKSLPANAKISKEAKESVQECVSEFISFVTGEASDRCQREKRKTINGDDLLWAMTT LGFDNYVGPLKAYLGKYRDTEEGDTDDDVVVEGVFDDSTINSTAFIGGADHHHFYGEVGGPRLTHHLNSHNGGATSLVYTLGVGGQYPPAVNGANGGMAS AAHHVHSDRIHQW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10035854 [exp]	0	1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10018852 [exp]	1.4	0.9006
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024581 [exp]	2.0	0.9047
AT4G39120		HISN7, IMPL2	HISTIDINE BIOSYNTHESIS 7, myo-...		Lus10017976 [exp]	4.5	0.8514
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	8.7	0.8896
AT4G19370			Protein of unknown function (D...		Lus10035672 [exp]	11.5	0.8694
AT3G15810			Protein of unknown function (D...		Lus10038097 [exp]	11.7	0.8024
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	12.2	0.8828
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002979 [exp]	14.5	0.8814
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10009917 [exp]	14.5	0.8580
AT3G45230			hydroxyproline-rich glycoprote...		Lus10022582 [exp]	14.7	0.8719

Compare expression of checked genes

Lus10035854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.