Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48030 498 / 5e-175 GFA2 gametophytic factor 2 (.1) AT1G28210 254 / 2e-80 ATJ1 DNAJ heat shock family protein (.1.2) AT2G22360 222 / 2e-67 DNAJ heat shock family protein (.1) AT4G39960 209 / 7e-63 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 200 / 8e-59 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 189 / 3e-54 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G22060 135 / 3e-35 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 127 / 2e-32 ATJ3 DNAJ homologue 3 (.1.2) AT3G62600 122 / 3e-31 ATERDJ3B DNAJ heat shock family protein (.1) AT5G25530 87 / 2e-18 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036638 [exp] 819 / 0 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10027634 [exp] 685 / 0 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10011934 [exp] 658 / 0 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10020949 [exp] 229 / 3e-71 AT1G28210 407 / 2e-141 DNAJ heat shock family protein (.1.2) Lus10000631 [exp] 221 / 4e-67 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 221 / 5e-67 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10023122 [exp] 207 / 3e-61 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 206 / 9e-61 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10035920 [exp] 192 / 5e-56 AT2G22360 619 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065500 [exp] 603 / 0 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 590 / 0 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G160200 [exp] 266 / 4e-84 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.007G094900 [exp] 222 / 9e-68 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 218 / 4e-66 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 199 / 3e-58 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.015G035300 [exp] 166 / 1e-45 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.009G015700 [exp] 149 / 2e-40 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 143 / 3e-38 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 138 / 3e-36 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [flax] [poplar] DnaJ_CXXCXGXG DnaJ central domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035855 pacid=23147381 polypeptide=Lus10035855 locus=Lus10035855.g ID=Lus10035855.BGIv1.0 annot-version=v1.0 ATGGTTAGTTACCGCCTCGTCGGTTCCCTTGCACGCCGCTCTCTCCATTCTCTGCTTCCTCAAAAGTGTCCTGATTATGTCTACAGAAGTTTGATCAATG GGAGCTATAGGAGATTAACTACAGCTTGTGGCTGTACTCGAGCTAGGATCTGCAATTCTTTTCCTCGGAATGTTGAGCATAAAGATTGGTCGTCATTCGG AGCCCCTAAAACTAATTTTCGTACAGCGAGGTTAATCCATGGCACAGCTTACTCCGCAAAAGATTACTATGACACACTTGGTGTCAGCAAGAATGCTACT CAAACAGACATTAAGAAAGCATATTATCAGCTAGCAAAGAAATTACATCCCGATAGTAACAAAGATGACCCTGAAGCCCAACAAAAGTTCCAAGAAGTTT CTAAGGCTTATGAGGTTTTGAAAGATGAAGAAAAGCGTGCACAATATGATGAGGTGGGACATGAGACTTTCGAACAAGGTGGCTCTGGTTTCCAACCCGG TGGGATGGGATTTGACAATCCATTCGGTGACATCAGGATGGAGGATATCTTCGGCAGCATGTTTAAGCAGAGGCTTGGTGGCCAAGATGTCAAGGTTGCA ATTGAACTATCCTTTATGGAGGCTGTTCGGGGATGCACAAAAAATATCACATATCAAACTGATGTTCCCTGTGAAACTTGTCGTGGTGAAGGTATCCCCC CTGGTGTGAAACCTCAAATATGTAAACGATGCAAAGGGACTGGCATGGTTTTCACCCAAAAAGGTTTTTTCAGTGTTCAGCACACCTGCAGTCAATGTGG TGGTGTAGGACAAACTGTATCGAGCTTTTGCAAATCGTGTCAAGGACGCAAGGTACTAAGAGGGTCAAAGTCAATCAAATTGGATATCGTCCCTGGAGTT GATGATAATGAAACAATCAAGGTACCTAGGAGTGGTGGAGCAGACCCCGACAGAAACCAACCTGGTGATCTTCTTGTCACTATAAAGGTGCGTGAGGATC CTGTCTTCCGGAGAGAGGGTAGTAACATACACGTAGATGCTGTTTTGAGCGTTACTCAGGCAATTCTTGGGGGAACGATTCAGGTCCCGACACTTACTGG AGATGTCGTGCTTAAGGTTCGTGCCGGTACCCAACCTGGGCAGAAAGTGGTGCTGAAGAAGAAAGGAGTCAAAGGACGGAACTCGTATACTTATGGCGAT CAGTTTGTGCACTTCAATGTCAGCCTCCCAACGAGTTTAACCCCAAGGCAACGTGAATTGCTGGAGGAGTTCAGCAAAGAAGAACAGGTTGAATGCGAGA AGCGTGCCGCCGCTGGGGCATCCGGCTAA
AA sequence Show only first row Show all	>Lus10035855 pacid=23147381 polypeptide=Lus10035855 locus=Lus10035855.g ID=Lus10035855.BGIv1.0 annot-version=v1.0 MVSYRLVGSLARRSLHSLLPQKCPDYVYRSLINGSYRRLTTACGCTRARICNSFPRNVEHKDWSSFGAPKTNFRTARLIHGTAYSAKDYYDTLGVSKNAT QTDIKKAYYQLAKKLHPDSNKDDPEAQQKFQEVSKAYEVLKDEEKRAQYDEVGHETFEQGGSGFQPGGMGFDNPFGDIRMEDIFGSMFKQRLGGQDVKVA IELSFMEAVRGCTKNITYQTDVPCETCRGEGIPPGVKPQICKRCKGTGMVFTQKGFFSVQHTCSQCGGVGQTVSSFCKSCQGRKVLRGSKSIKLDIVPGV DDNETIKVPRSGGADPDRNQPGDLLVTIKVREDPVFRREGSNIHVDAVLSVTQAILGGTIQVPTLTGDVVLKVRAGTQPGQKVVLKKKGVKGRNSYTYGD QFVHFNVSLPTSLTPRQRELLEEFSKEEQVECEKRAAAGASG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10035855 [exp]	0	1
AT1G30010			Intron maturase, type II famil...		Lus10028124 [exp]	1.4	0.9197
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10018770 [exp]	2.8	0.8966
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	4.2	0.9037
AT3G62200			Putative endonuclease or glyco...		Lus10009982 [exp]	6.0	0.8863
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	6.9	0.8846
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10023119 [exp]	7.7	0.8934
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	8.4	0.9038
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10018651 [exp]	9.2	0.8710
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	10.2	0.8635
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10043022 [exp]	10.4	0.8681

Compare expression of checked genes

Lus10035855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.