Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64930 272 / 2e-84 HYS1, CPR5 HYPERSENESCENCE 1, CONSTITUTIVE EXPRESSION OF PR GENES 5, CPR5 protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016818 [exp] 851 / 0 AT5G64930 340 / 3e-110 HYPERSENESCENCE 1, CONSTITUTIVE EXPRESSION OF PR GENES 5, CPR5 protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G082100 [exp] 437 / 1e-148 AT5G64930 252 / 2e-76 HYPERSENESCENCE 1, CONSTITUTIVE EXPRESSION OF PR GENES 5, CPR5 protein, putative (.1) Potri.005G083600 [exp] 436 / 3e-148 AT5G64930 273 / 3e-84 HYPERSENESCENCE 1, CONSTITUTIVE EXPRESSION OF PR GENES 5, CPR5 protein, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035856 pacid=23147649 polypeptide=Lus10035856 locus=Lus10035856.g ID=Lus10035856.BGIv1.0 annot-version=v1.0 ATGAAGAAGAAAACCAAAACTATAAAGAAGAAAATCTCGATAGATGACGCTTCATCTTCGTCCTCTGCTTCCTCTTCTTTTAGCTCTTTCCAGAGGAATT CACGTACACACCTTCGACGGAAGGTGGTGATTGCTCCCTTACACCGCCGTGGTGGGGATGCTGCTATAACGGGCGAGAACTTGGACGCCATTGCTCTCCC TCTCGGCATGTCCTTTGCCGCAGTCATTACACAGGTTTTGGAGAAGAAAGATGTTCAGAGCGAAAGGATGTCCGCGGAGCTTCTGTCAATGATTTGTACA ACTGCTGTCAGAGAATCTTTAGCGAATGTTTTTGGTAATAAATTTGAATTGTTTGCTAGTAACTTCCAAAGATCATTCCGAAGCACCTTAAGGACTCTTC GAGTGATTAGTGAATCACCTTTCCATAGAGGTCCTCTTGATTCAGGCCAACTGAATCCAGATAAGTTTGGTCCTGATGTGGTTTCCATCAAACCAGTTGC TGGTTCCACAAGCTGCTCTAGTACCAGAAATTTTTATGATGAATCAGACTTGCCATTCAGTTTAGTCCACAATCGGGTGCATTCAACTGAAGAAATTGAA GGGGGCCTCTCTACAGTTAGTTTGACCCGGGAACTTACCGTTCATGGCCAGATGAACCAACTGACATGTTCTCCTAGCTCATTAGGTTCAAGGATTGTCG CAGAGCAAGCCCGTTCCAATGACCTCAAAGAATTGGAGATTGGTCTGTCCATGAGAAGACTCAAATTGGAAATGGAACAAATAGCTCTTAGCGAGGATTC CAATCGTCTAAAGGAGTCTAAATTGACAATGGGTAAAGAAAAGGCTTCTTTTAAAGCTGAAAAGTTCAAGACTCAACAAGAAGACACCAGACATGCTGAG CTGCTTCAGAAATGCATAGACTGCCTTGTGGCTGGTTTGTTCATCATGTCAGCATCCCTCTGTTATAGTGCATATGTCTATTCCCATAGAAGGATTACAG AAGCTACTCAGATTTGTGCTGCCCCTTTTGAGGAAAGCAAATCGTGGTGGATGCCGAAATCAGTCTCCTCTTTGAATTCTGGGCTGCACACTCTGAGGTG TCAAGTTGAAGTGGTGAGCAGGATGGTATTTGGGGTACTGATGATTCTTGCAGTTGCTTATCTGCTTCTGCAGCGTTCAGCGACTGCACAACAAAGGATG ATGCCAGTGACTACCATCTTATTGATACTGGGAGTTGCATGTGGGTTTGCTGGGAAACTGTGTGTGGATACGTTAGGAGGGGATGGATTCCTTTGGCTTT TGTTATGGGAATCTATATGCTTGCTGCACTTCCTAACCAACTTGTTCACATCAACTGTGTTCCACATACTTTGCGGGTCACTAGACATCTCCCAAGGTCA CAGGAGGACTCTGATATGTCCGTACTGGGCTCGACGGTCTATTTTCTACACAATCACACTCCTGGTCTTACCGTTATGCTGTGGACTACTGCCTTTTGCT GGTGTTAGGGAATGGACGGACCATTTCTACATGCTTGCTATGGTCGAGAGCATCTGA
AA sequence Show only first row Show all	>Lus10035856 pacid=23147649 polypeptide=Lus10035856 locus=Lus10035856.g ID=Lus10035856.BGIv1.0 annot-version=v1.0 MKKKTKTIKKKISIDDASSSSSASSSFSSFQRNSRTHLRRKVVIAPLHRRGGDAAITGENLDAIALPLGMSFAAVITQVLEKKDVQSERMSAELLSMICT TAVRESLANVFGNKFELFASNFQRSFRSTLRTLRVISESPFHRGPLDSGQLNPDKFGPDVVSIKPVAGSTSCSSTRNFYDESDLPFSLVHNRVHSTEEIE GGLSTVSLTRELTVHGQMNQLTCSPSSLGSRIVAEQARSNDLKELEIGLSMRRLKLEMEQIALSEDSNRLKESKLTMGKEKASFKAEKFKTQQEDTRHAE LLQKCIDCLVAGLFIMSASLCYSAYVYSHRRITEATQICAAPFEESKSWWMPKSVSSLNSGLHTLRCQVEVVSRMVFGVLMILAVAYLLLQRSATAQQRM MPVTTILLILGVACGFAGKLCVDTLGGDGFLWLLLWESICLLHFLTNLFTSTVFHILCGSLDISQGHRRTLICPYWARRSIFYTITLLVLPLCCGLLPFA GVREWTDHFYMLAMVESI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64930		HYS1, CPR5	HYPERSENESCENCE 1, CONSTITUTIV...		Lus10035856 [exp]	0	1
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Lus10032422 [exp]	8.7	0.7563
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10008130 [exp]	10.5	0.7868
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Lus10016267 [exp]	12.6	0.7572
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Lus10037747 [exp]	44.8	0.7434
AT1G26580			unknown protein		Lus10036888 [exp]	62.2	0.6813
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10040111 [exp]	67.3	0.6330
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10008480 [exp]	68.5	0.7134
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002910 [exp]	86.9	0.6745
AT5G63830			HIT-type Zinc finger family pr...		Lus10003211 [exp]	90.1	0.6719
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10015177 [exp]	93.8	0.6646

Compare expression of checked genes

Lus10035856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.