Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22010 1613 / 0 RKP related to KPC1 (.1.2) AT4G09340 54 / 7e-07 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT1G35470 52 / 2e-06 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G03965 47 / 3e-05 RING/U-box superfamily protein (.1) AT4G22250 46 / 5e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016817 [exp] 2003 / 0 AT2G22010 1406 / 0.0 related to KPC1 (.1.2) Lus10009451 [exp] 51 / 5e-06 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009316 [exp] 49 / 2e-05 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020190 [exp] 48 / 3e-05 AT1G35470 167 / 1e-48 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G083800 [exp] 1851 / 0 AT2G22010 1726 / 0.0 related to KPC1 (.1.2) Potri.007G081900 [exp] 1819 / 0 AT2G22010 1712 / 0.0 related to KPC1 (.1.2) Potri.004G003101 [exp] 49 / 8e-06 AT4G03965 135 / 3e-39 RING/U-box superfamily protein (.1) Potri.013G108400 [exp] 47 / 8e-05 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.002G224200 [exp] 44 / 0.0002 AT4G03965 116 / 7e-33 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00622 [flax] [poplar] SPRY SPRY domain
Representative CDS sequence Show only first row Show all	>Lus10035857 pacid=23147422 polypeptide=Lus10035857 locus=Lus10035857.g ID=Lus10035857.BGIv1.0 annot-version=v1.0 ATGGCAGAAGATAGCATGCGAAGTGGTGGGCTATCTTCTGGGTTGGCTGTAGTATTGAAAGGCGAGGAGGAAAAGGACAGTTCCTCCAAAAGCCGACTTG TTTCGTGTTTTGATGATTTTGGTGATCAGACTGTCGAACGTGCTCTGGAGTATATTTTTGCTTTTCCTCACAGATCTCTCGCTCCGGTTACTGGTCCAGT CAACATAGATCTAGTCTGCACTTTGATAAAGAGTGAGATGGCTACATCTAGTCCAAATCCTTCTACTTTGACCAGTAAAAGGGAAGGAATTTGTATTGAG AATGCTAGTGGATCTCTGACGGTGGGGCTTGAAGAATTAAGCATATGTGGTGACATTAGAATCATTAAGCCTCCGTTGCTTATTGAGAGCTTAGCAATGT TCAGCAGTATTAGGGCCAATGTGCGAGTTTGGAAAGGTAAATGGATGTATGAGGTTGTTTTAGAAACTTCTGGGGTACAACAGCTTGGATGGGCAACTCG ATCTTGTCCTTTTACCGACCATAAAGGTGTAGGTGATGCGGATGATTCATTTGCTTTTGATGGGAAAAGAGTTAGCAAGTGGAACAAAGATGCCGAGCCG TATGGTCAATCTTGGGTTGTTGGTGATGTAATTGGTTGTTGCATTGACATGGACCTTGATGAGATCCTATTCTACAGAAATGGTGCGTCTCTTGGTGTGG CGTTCCATGGTGTTCGTAAAATGGGACCTGGGTTTGGGTACTATCCAGCTATATCTCTTTCTCAAGGTGAGCGTTGTGAGTTGAACTTTGGAGCACGACC TTTTAAGTACCCCATTAAGGGTTTTCTTCCTCTCCAAGCCCCCCCATCTGCTAATCATTTTGCTTCACAAATGCTTAGCTGCTTGTCGAGGCTGTTGGAC CTGCAATCCAGGGAGCAAGCTGATAGTTTTTTGGCTGCCAAATTTAGAAGATTGAAGAGGTTCGTCTCACTTGAGGAATTTTATTCTCCTGTTTCTCGTG GAATATGTGAGGTAATGTTCTCTGTACTTGGGACAGAAGCCGAGAGCTTGGAATACATAGCTTGGGGTTCGTTTCTCTCGTTCATGGTGGAGGTATTTAG GACTCAAGCACCCCATGAATATGTGGGTTTGGATAAAATCATTAATGTCTTTCTGGAATTTCATGAGTCACATATGGTGTTTGAGCATCTTGTTAATGCA CTTTCAAGTGCCTGCAAAACAGCTCCATTAATATTGACCGACTGTCCATACTCAGGATCTTATCCTTATCTTGCCCTGGCATGCCATATTTTGAGGCGGC AAGAACTAATGGTACTCTGGTGGAAATCATCAGATTTTGAATCATTATTTGAAGGATTTTTATCCCAAAAGAATCTGAACAAACAGGATCTGCAGTGTCT GATGCCTTCTGTTTGGTGGCCTGGTTCATATGAGGATGCTGCTTATGAAGGTAGCATGATGTTGACAACAACAGCGTTATCTGAAGCAATCAGTAAGATT GAAGAGAAGCATCGGGAGCTTTGTCTTTTGGTTATTCAATTTCTACCACCGACATTGCCGCCTCAGTTTCCTGGTTCAGTGTTTAGGACTTTTCTACAGA ATCTTCTATTGAAGAACCGGGGAGCAGACCGCAATGTGCCACCTCCTGGAGTTTCCGGCAACTCTGTGCTTGTTTCTTTGTACACTGTCATACTACACTT TCTATCGGAAGGATTTGCTATTAGGGATGTAGGTGGAACAAAGGGACATGACCTTGGATTTCTTCATAGAGGTGGAGAGAAGAGTTTTCCAGTTGAACTC TTCTTGAAGAATGATTCTCATCGAACTGACATCTCTAGGCTTGGAGGATCTTTTAGTCACTTGTCAAAATCTCATCCTATAAGTGATCAAGAAGATGAAG TAATCCGGTGGGAGGAAGGCTGTGTGGATGATGAAGAAACTAGAGTAACACATAATACGACTCAGAAACCATGTTGTTGCTCATGTTACGAAGTTGAATT TGCAAGATCTTCAAAGAATTTGGTCAGATATGCGCCTAGAGGTTCTCGTGTCCATTGTAGCCCAATTGGGGAAAGGTCTGCTCAGTCGGCAGAATGCAGT GCTGGAAGTTTGAGTGACGAGATAGTGGACAAACCTAGTACGAGCGATCAATCTGAGGCTGACTTTGGTTATTGTCCCTTGTGGAATTTAAGGATAGTGC CAAGAGAACGTAACGTTTCTTGCGCTACCCTTAGAGAAGTGGAGCTTCTAGATGCTTTGCTTTTGTTGTATCAGATAGGTGTTGCCCCAAATTTTAAGCA GGCATCATATTTCGTGTCTCATCAGTCGCAATCAGTAGCCCTCCTTGAAGAAACTGAAAGACAAATAAGGGAGCGACCTAGCAGTGAACAACTAAGGCGA TTGAAGGAAGCCCGTAATGATTATCGAGAAGAAGTAGTTGATTATGTCAGACATTCCACATGGTATCGGATTTCTCTTTTCACCCGATGGAAGCAAAGAG GGATGTATGCAGTATGTATGTGGATAGTCCACCTACTTCTGGTTCTCAGCAAAGTTGATTCCTTATTTCTCTATGTCCCAGAATATTATCTTGAGACAAT AGTGGACTGCTTTCATGTGCTGCGGAAGAGTGATCCTCCGTTTGTCCCTTCAGCAATATTCATCAGACAAGGCCTTGCTCCATTTGTCACATTTGTGGTT AGCCACTTCAACGACCCAAGGATACTGAGTGCAGATCTCAGGGATCTTCTTCTTCAGTCAATATCAGTGCTTGTACAGTACAAGGAATATGTGGCAACAT TTGAGAGCAATAGGGCAGCCACACAAACATTGCCAAGATCCTTGCTGACTGCTTTTGATAACAGATGTTGGATCCCTGTAACAAACATTCTTTTGCGGTT GTGCAAAGGTTCTTTGTTTGGATCTTTGAAGCACGGGGAATCCTCTTCGTCTTCAGTGGTCTTCCAGACATTGCTGAGAGAAACTTGCATCAGTGATCAG GAGTTGTTCTCAGGTTTCCTTAATAGACTCTTTAATACTCTAAGCTGGACGATGACTGAGTTCTCAGTTTCTGTTCGGGAAATGCAAGAAAAATACCAGT TCTGTACCCGTGAGATTCCTCAGGCATTCTTATCTGGGAGGGATACAAACCTCCGGAGGCTAACTGAAGTAATAGTATTTATTCTCAACAACATCACTTC AGCTGCTGATGCAGAGTTTTTTGACTTGTCACTCCGTCGACATGGCCAGACTGCAGAGAAAGTAAACAGAGGAATGATTTTAGCACCTCTGGTGGAGATC ATACTGAATTTGTTGGATGCAAATGTTGTAGGGAAGGATTCCGAGGATCAGAATGATGTTGTGGGTGTATTTGCAAGCATGGACTGTCCTGATACAGTGC ACTGCGGCTTCCAGTACCTCTTAGAGTACAACTGGGCTGGCTCTGGGCGGGGAGAGTCTTACGTTGGGAAGTTGTGCCAGCTTGAGAATTTCTTGGGCCT TCTTATAAGCCGGATCGAATCAGATGAAGTTGAGCGGTCTCATCGAATAGGGGAAGCAAACAATGATGACACTACTTGCTGTATTTGTTACACCAGTGAA GCTGATGCACAGTTTGGTCCTTGCTTGCATCGCTCTTGCTATGGTTGCATAACCAGACACCTACTCAACTCCCACAGATGTTTCTTCTGCAACGCCACGG TCCTCGAGGTGGTCAACATCACCGAAAGCAGTGAAGTCGATACTCATTCTCTCGCCTAA
AA sequence Show only first row Show all	>Lus10035857 pacid=23147422 polypeptide=Lus10035857 locus=Lus10035857.g ID=Lus10035857.BGIv1.0 annot-version=v1.0 MAEDSMRSGGLSSGLAVVLKGEEEKDSSSKSRLVSCFDDFGDQTVERALEYIFAFPHRSLAPVTGPVNIDLVCTLIKSEMATSSPNPSTLTSKREGICIE NASGSLTVGLEELSICGDIRIIKPPLLIESLAMFSSIRANVRVWKGKWMYEVVLETSGVQQLGWATRSCPFTDHKGVGDADDSFAFDGKRVSKWNKDAEP YGQSWVVGDVIGCCIDMDLDEILFYRNGASLGVAFHGVRKMGPGFGYYPAISLSQGERCELNFGARPFKYPIKGFLPLQAPPSANHFASQMLSCLSRLLD LQSREQADSFLAAKFRRLKRFVSLEEFYSPVSRGICEVMFSVLGTEAESLEYIAWGSFLSFMVEVFRTQAPHEYVGLDKIINVFLEFHESHMVFEHLVNA LSSACKTAPLILTDCPYSGSYPYLALACHILRRQELMVLWWKSSDFESLFEGFLSQKNLNKQDLQCLMPSVWWPGSYEDAAYEGSMMLTTTALSEAISKI EEKHRELCLLVIQFLPPTLPPQFPGSVFRTFLQNLLLKNRGADRNVPPPGVSGNSVLVSLYTVILHFLSEGFAIRDVGGTKGHDLGFLHRGGEKSFPVEL FLKNDSHRTDISRLGGSFSHLSKSHPISDQEDEVIRWEEGCVDDEETRVTHNTTQKPCCCSCYEVEFARSSKNLVRYAPRGSRVHCSPIGERSAQSAECS AGSLSDEIVDKPSTSDQSEADFGYCPLWNLRIVPRERNVSCATLREVELLDALLLLYQIGVAPNFKQASYFVSHQSQSVALLEETERQIRERPSSEQLRR LKEARNDYREEVVDYVRHSTWYRISLFTRWKQRGMYAVCMWIVHLLLVLSKVDSLFLYVPEYYLETIVDCFHVLRKSDPPFVPSAIFIRQGLAPFVTFVV SHFNDPRILSADLRDLLLQSISVLVQYKEYVATFESNRAATQTLPRSLLTAFDNRCWIPVTNILLRLCKGSLFGSLKHGESSSSSVVFQTLLRETCISDQ ELFSGFLNRLFNTLSWTMTEFSVSVREMQEKYQFCTREIPQAFLSGRDTNLRRLTEVIVFILNNITSAADAEFFDLSLRRHGQTAEKVNRGMILAPLVEI ILNLLDANVVGKDSEDQNDVVGVFASMDCPDTVHCGFQYLLEYNWAGSGRGESYVGKLCQLENFLGLLISRIESDEVERSHRIGEANNDDTTCCICYTSE ADAQFGPCLHRSCYGCITRHLLNSHRCFFCNATVLEVVNITESSEVDTHSLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10035857 [exp]	0	1
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	3.2	0.8443
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	4.9	0.8281
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10022423 [exp]	8.3	0.8211
AT5G66380		ATFOLT1	folate transporter 1 (.1)		Lus10028339 [exp]	12.1	0.7519
AT2G36370			ubiquitin-protein ligases (.1)		Lus10035561 [exp]	13.7	0.7583
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036140 [exp]	14.0	0.7728
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10034780 [exp]	14.8	0.8036
AT5G23490			unknown protein		Lus10004286 [exp]	16.0	0.7693
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10008276 [exp]	18.3	0.7753
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005176 [exp]	19.8	0.7710

Compare expression of checked genes

Lus10035857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.