Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09995 214 / 1e-69 unknown protein AT1G08530 103 / 2e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016816 [exp] 456 / 5e-165 AT5G09995 216 / 4e-70 unknown protein Lus10042523 [exp] 100 / 2e-25 AT1G08530 263 / 2e-88 unknown protein Lus10021985 [exp] 100 / 6e-25 AT1G08530 256 / 3e-85 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G081800 [exp] 234 / 2e-77 AT5G09995 246 / 5e-82 unknown protein Potri.013G052700 [exp] 109 / 1e-28 AT1G08530 277 / 1e-93 unknown protein Potri.019G030400 [exp] 102 / 8e-26 AT1G08530 266 / 1e-89 unknown protein Potri.010G003700 [exp] 45 / 9e-06 AT5G09995 49 / 3e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035858 pacid=23147509 polypeptide=Lus10035858 locus=Lus10035858.g ID=Lus10035858.BGIv1.0 annot-version=v1.0 ATGATTAGTGCTGCAATGTTGCAGGTCCCCAGTCATCCGGTGCCGTTTCCCAATTTCAGCCACAGTTTCAGCGCCGTCCCGAAGCTTCGTCGGCATATTG GACGTCTTCCGCCACTCTCCCTGCGGTCTCACTTCGGTGTTAACGCTGCAGAGCTGTCAATTTCGTCCGGGTACACCGAGTCCGTCGGATCAGCTACAGT TCCTGCTTCTATACTTGAGCACAACCTCACCCAACGCCATGTCCTCTTCCTTAATGTCTTCGCTTGCACGGCAGCAGTTTCAGCGACCTGGATATTCCTC TCTGCCATTCCAACTCTCTTGGCTTTTAAGAGAGCAGCTGAGTCACATCAGAAACTGATGGATGTAACTAGGGGAGACCTCCCCAGTACAATGGCTGCCA TTCGCTTATCCGGTATGGAGATCAGTGACCTTACAATGGAGCTCAGCGATCTAGGTCAAGAGATTACCCAGGGTGTTAAAGTCTCAACTAGGGTAGTTGG TGTGGCAGAAGAGAAGCTTCGCGGATTCATGAATATGGCTTCTTCTCCACCAGCTACGTTGCAGAAAGTAGCGAATCCAGGAACTAAGAAGGAAGAAGCA GGTTTGGCACGTTCGGCAAGGGGGCTGAAGGAGGGGATTGTGAAAGGCAGGTCATTCTTCCAACTATTTCTCACCCTCACCGGCGTCATCAGGTTGGCAC TTGGTTATTTTGCAAAGCGGGCTAAGAGGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10035858 pacid=23147509 polypeptide=Lus10035858 locus=Lus10035858.g ID=Lus10035858.BGIv1.0 annot-version=v1.0 MISAAMLQVPSHPVPFPNFSHSFSAVPKLRRHIGRLPPLSLRSHFGVNAAELSISSGYTESVGSATVPASILEHNLTQRHVLFLNVFACTAAVSATWIFL SAIPTLLAFKRAAESHQKLMDVTRGDLPSTMAAIRLSGMEISDLTMELSDLGQEITQGVKVSTRVVGVAEEKLRGFMNMASSPPATLQKVANPGTKKEEA GLARSARGLKEGIVKGRSFFQLFLTLTGVIRLALGYFAKRAKRKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09995			unknown protein		Lus10035858 [exp]	0	1
AT5G39600			unknown protein		Lus10033166 [exp]	2.0	0.8091
AT2G02590			unknown protein		Lus10013278 [exp]	2.6	0.8409
AT5G60190			Cysteine proteinases superfami...		Lus10036134 [exp]	7.3	0.7585
AT4G38100			unknown protein		Lus10012739 [exp]	7.9	0.8128
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10032390 [exp]	8.8	0.8242
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Lus10011960 [exp]	10.2	0.7863
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10004197 [exp]	11.2	0.7752
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10011915 [exp]	16.7	0.8031
AT3G06200			P-loop containing nucleoside t...		Lus10021947 [exp]	19.1	0.7812
AT3G22550			Protein of unknown function (D...		Lus10007668 [exp]	20.5	0.7089

Compare expression of checked genes

Lus10035858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.