Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 738 / 0 Major facilitator superfamily protein (.1) AT3G16180 689 / 0 Major facilitator superfamily protein (.1) AT5G62680 389 / 2e-127 Major facilitator superfamily protein (.1) AT1G69870 384 / 9e-126 NRT1.7 nitrate transporter 1.7 (.1) AT1G18880 374 / 5e-122 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT3G47960 374 / 2e-121 Major facilitator superfamily protein (.1) AT5G11570 367 / 4e-121 Major facilitator superfamily protein (.1) AT1G68570 361 / 5e-117 Major facilitator superfamily protein (.1) AT1G27080 360 / 8e-117 NRT1.6 nitrate transporter 1.6 (.1) AT1G62200 347 / 9e-112 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025802 [exp] 1048 / 0 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 535 / 0 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10037896 [exp] 432 / 2e-144 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10038616 [exp] 404 / 1e-134 AT1G52190 446 / 2e-151 Major facilitator superfamily protein (.1) Lus10036669 [exp] 384 / 1e-125 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10017817 [exp] 377 / 7e-123 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10037221 [exp] 374 / 1e-121 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 369 / 7e-120 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10036705 [exp] 364 / 9e-118 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G185700 [exp] 777 / 0 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 577 / 0 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 566 / 0 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 561 / 0 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 558 / 0 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 551 / 0 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 549 / 0 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 546 / 0 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 546 / 0 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 533 / 0 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10035860 pacid=23141041 polypeptide=Lus10035860 locus=Lus10035860.g ID=Lus10035860.BGIv1.0 annot-version=v1.0 ATGGAGGTTGATCATTACAACAACAACAACAACAACGACAAGAAGATACAAGAAGAGGTAGCTGCTGCTGCTGCTGCAGCGCCGCTCTCTGCTGATAATA ATGAAATTGATACTTCACGGAAGAAGCAGGGGGGTCTGATTACAATGCCATTCATCATTGCGAATGAGGCATTTGAGAAGGTGGCGAGCTATGGACTGGC GCCGAACATGATAATGTATCTGATGAAAGATTACAGGATGGGAGTTGCGAAAGCAGCCAACATTCTGTTCCTGTGGTCAGCCGCCACTAATTTCACCCCG CTTCTCGGTGCTTTCTTCTCCGACTCTTTTCTGGGTCGCTACCTCACCATTACTCTCGGCTCCCTATTCAGCTTCCTGGGAACAATCTTGCTATGGATAA CAGCCATGCTCCCACAAACAAAGCCTCCACCATGCAACGCTACTGCTGCTGGAAGCACCTGCTCGGACCCAACATCGGCTCAACTCGCTCTCCTCTTCTC GGCATTTGCTCTCATGTCTATTGGTGCCGGAGGCATTAGGCCTTGTTCCTTAGCATTTGGTGCTGATCAAGTTGATAACAGAGCAAACCCTGCTAAGAAC AAAAGGATACTCGAGACTTTCTTCGGATGGTATTATGCCTCCACTGCTCTTTCTGTCTTGATTGCCCTGACAGCCATTGTCTACATTCAGGACCGCCTCG GTTGGAGACTTGGTTTCGGAATCCCCGTTATCCTTATGTTCCTCTCAGCTCTGCTCTTCGTTGTTGCTTCCCCATTCTATGTGAAGCATAAAGCTACCAT GAGTTTCCTCACTGGTTTTGCTCAGGTGGTTGTTGTTGCTTACAAGAACAGGACACTCCCTTTCCCTAGTACTGGAACTGGATCCTATCATTGCGGCAAA GGCTCCACCTTTATTGCTCCTACCAAGAAACTAAGGTTCTTGAACAAGGCGTGCATAATTATCGACCATGACAAAGACATAGCCTCGGATGGATCAGCGA CTAATCCTTGGAAGCTTTGCACAGTTCAGCAAGTTGAAGAGCTGAAAGCAATAATCAAAGTCATCCCTATATGGTCTAGTGGGATCATGTTGTCTATAAA CACAAGCCAGACTTCATTCCCACTTCTCCAAGCTAGTTCCATGGACAGGCACCTTGCTTCTTCAGGGTTCCAAATTCCTGCAGCTTCCTATGCAATGTTC TTGGTAGTTACTATAATAGTTTGGGTTGTTCTCTACGACCGAGCCATCCTTCCTCTTGCTTCGAAGCTCTGGGGAAGGCCGGTGAAGCTAAGCACAAAGC TCAGAATGGGGCTTGGCTTAGCTGTCTCATGTCTCAGCATGGTGGCTGCAGCAGCTGTTGAGCATGCTCGACGAAGAAAGGCTATTCAAGAAGGATATTT GAACAATCCAGTTGCTGTAGTGAACATGTCAGCAATGTGGCTTGTCCCACAGTACGTGCTGCTCGGTCTTGCAGAATCGCTCAACGCAATCGGTCAGATA GAGTTTTACTACTCCGAGTTTCCCAAATCCATGTCGAGTATAGCTTCTTCGTTGTTCGGAGTCGGAATGGGAGTGGCGAGCTTGTTGTCAAGTGGTATAC TGAGTGCTGTGAATACGCTCACTTCAAAAGATGGGAAGCAAGGTTGGATTAACGACAACATCAATCAGGCTCGTTATGATAACTACTACTGGCTTCTGGC TGTAATGGGGGCTGTGAATGTTGTCTACTTTGTCATCTGCAGTTGGGCCTATGGACCTTGTGAAGATGAAATGACTAAAGTTGGGAATGAAGGAAATGGT GGTTTGAAAGAGGAAGAAATAATTGGAAATGGAAGACATCATTTGGAAGAACAAGGTCGTTGA
AA sequence Show only first row Show all	>Lus10035860 pacid=23141041 polypeptide=Lus10035860 locus=Lus10035860.g ID=Lus10035860.BGIv1.0 annot-version=v1.0 MEVDHYNNNNNNDKKIQEEVAAAAAAAPLSADNNEIDTSRKKQGGLITMPFIIANEAFEKVASYGLAPNMIMYLMKDYRMGVAKAANILFLWSAATNFTP LLGAFFSDSFLGRYLTITLGSLFSFLGTILLWITAMLPQTKPPPCNATAAGSTCSDPTSAQLALLFSAFALMSIGAGGIRPCSLAFGADQVDNRANPAKN KRILETFFGWYYASTALSVLIALTAIVYIQDRLGWRLGFGIPVILMFLSALLFVVASPFYVKHKATMSFLTGFAQVVVVAYKNRTLPFPSTGTGSYHCGK GSTFIAPTKKLRFLNKACIIIDHDKDIASDGSATNPWKLCTVQQVEELKAIIKVIPIWSSGIMLSINTSQTSFPLLQASSMDRHLASSGFQIPAASYAMF LVVTIIVWVVLYDRAILPLASKLWGRPVKLSTKLRMGLGLAVSCLSMVAAAAVEHARRRKAIQEGYLNNPVAVVNMSAMWLVPQYVLLGLAESLNAIGQI EFYYSEFPKSMSSIASSLFGVGMGVASLLSSGILSAVNTLTSKDGKQGWINDNINQARYDNYYWLLAVMGAVNVVYFVICSWAYGPCEDEMTKVGNEGNG GLKEEEIIGNGRHHLEEQGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52190			Major facilitator superfamily ...		Lus10035860 [exp]	0	1
AT1G52190			Major facilitator superfamily ...		Lus10025802 [exp]	1.0	0.9563
AT1G25250	C2H2ZnF	ATIDD16	indeterminate(ID)-domain 16 (....		Lus10031314 [exp]	2.4	0.8761
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10011899 [exp]	2.4	0.8851
AT2G17550			unknown protein		Lus10035987 [exp]	6.3	0.8397
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10022833 [exp]	6.5	0.8488
AT2G19770		PRF5	profilin 5 (.1)		Lus10037591 [exp]	7.4	0.8491
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10012689 [exp]	7.7	0.8387
AT5G46530			AWPM-19-like family protein (....		Lus10015255 [exp]	11.3	0.8494
AT5G24090		ATCHIA	chitinase A (.1)		Lus10010137 [exp]	12.0	0.8437
AT1G61350			ARM repeat superfamily protein...		Lus10002598 [exp]	12.0	0.8303

Compare expression of checked genes

Lus10035860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.