Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16170 620 / 0 AAE13 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) AT3G48990 124 / 3e-30 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 95 / 3e-20 AMP-dependent synthetase and ligase family protein (.1) AT1G30520 93 / 8e-20 AAE14 acyl-activating enzyme 14 (.1) AT1G20510 90 / 1e-18 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT4G05160 89 / 2e-18 AMP-dependent synthetase and ligase family protein (.1) AT3G05970 89 / 2e-18 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT1G21540 88 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) AT1G21530 88 / 4e-18 AMP-dependent synthetase and ligase family protein (.1.2) AT1G20500 87 / 6e-18 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025801 [exp] 880 / 0 AT3G16170 466 / 4e-161 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) Lus10039232 [exp] 115 / 4e-27 AT3G48990 840 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 93 / 1e-19 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 91 / 6e-19 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016630 [exp] 89 / 1e-18 AT4G19010 532 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10004483 [exp] 89 / 3e-18 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10029918 [exp] 88 / 4e-18 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10015998 [exp] 87 / 9e-18 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10013831 [exp] 86 / 2e-17 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G185500 [exp] 698 / 0 AT3G16170 705 / 0.0 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) Potri.015G144700 [exp] 128 / 1e-31 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G105900 [exp] 118 / 3e-28 AT3G48990 750 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G112800 [exp] 90 / 6e-19 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G090200 [exp] 89 / 3e-18 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.002G012800 [exp] 88 / 3e-18 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 86 / 1e-17 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 86 / 2e-17 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.003G099700 [exp] 86 / 2e-17 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.011G164100 [exp] 84 / 9e-17 AT1G30520 645 / 0.0 acyl-activating enzyme 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10035861 pacid=23141128 polypeptide=Lus10035861 locus=Lus10035861.g ID=Lus10035861.BGIv1.0 annot-version=v1.0 ATGAATTGGGCAGGGGCAGCTTCGTCTACTACGTCAATGGAGGTGGTGAAGTCAGTTTACAACCAAGGGGGGGAGAGGATTGCCATCAGAGCTGATCACA AGAGTTACAGTTATGCTCAGCTAGTTTCCTCGGCATGGGAGATTTCTAATCTCTTGTGTAAAGCTGGCTTGAAGCCTATTGATGGTGCTAGAAGTAATGG TCCTCTTTCTGGGGCACGGATAGGGATCGTGGCTAAACCTTGTTTCGAGTTTGTTGCGGCAGTATTGGCAACTTGGTTTAGTGGAGGTGTTGCGGTTCCT CTTGCAGTGAGCTACCCTGAGTCAGAGCTCTTACATGTGATGAATGACTCTGGGATATCGATGGTGCTGAGTACGGAAGATTATCACGAAGTAATGGAAA AGGTTGCTTCCAAGTGTGCTGCTCAATTTTCTTTGCTTCCATCTGCAGCCAGTATTTCTTCTGGGACAAGTCCAAATGATCTGAAAAATGTTGGAGAAAT GGACGCTCTAAAAGGTGACGATCCAGCACTGATCATCTATACGAGTGGCACAACTGGCAAGCCGAAAGGGGCGCTTCACACACACAATAGTGTCAATTCA CAGGTTGAGTTTATGCCAAAATTTAGCGTGAAAGGAGCCTGGCAGAGATGGCGAGAGTCATATCCAGAGAATGGAGGGAAATCTGAGGATGCTATAACAG CATTTACAGGAGTTCCCACTATGTATAATTGGCTAATTCAAGGCTATGACTCGATGGATCCAGATTTACAAGCTGCCTCAGCCTTTGCTGCAAGACAGTT GAGATTGATGATGTGCGGTTCCTCTGCGCTTCCTGTTCCTGTCTTGCAACGGTGGGAAACAATCACTGGACACCGCCTTTTGGAAAGATATGGCATGACT GAATTTGTCATGGCTATATCAAATCCCTTGAAAGGTACACGGAAAGCAGGCACTGTTGGCCAACCACTTCCTAGAGTACAGGTCAAAATTGTACAAGAGG GAAGTGATAATGATGATACTGGGGTGGGTGAGATTTGTGTCAAAAGCCCCTCACTATTCACGGAATATTGGAAGCTTCCACAGGTTACTAAGGAATCATT CACTGAGGATGGGTTCTTCAAAACTGGGGATGCTGGTAAAATAGATGAAGAAGGATACTATGTCATATTGGGACGTAAAAGTGCTGACATTATGAAAGTT GGAGGTTATAAGTTGTCTGCATTGGAAATTGAATCTATTTTATTGGAGCACCCATCTGTGGGGGAATGTTGTGTATTGGGATTGCCCGACAAAGACTTCG GAGATGCAGTTGTTGCAATCATTGTACTGAATGACGAATGCAAGAAAAAACAGGAGGAAGAATCAAGCGATGCGTTAACTTTGGAAGGCCTGCGTGAGTG GGCTAAAGACAAACTTGCACCATACAAGGCAAGTTACTCTCTTTGTCTGTTCTTTCTCTTGCCACCCAAGAAACAAGAAAGCAAACCAAGTCTAAATATG CCTTTATTTTCTTTGCAGCTGCCTACCAAACTCTGCTTGTGGGAATCACTGCCCCGCAACGCTATGGGAAAGGTGAACAAGAAAGAACTGAAAAAAGTGC TTTCTCCTGAATAA
AA sequence Show only first row Show all	>Lus10035861 pacid=23141128 polypeptide=Lus10035861 locus=Lus10035861.g ID=Lus10035861.BGIv1.0 annot-version=v1.0 MNWAGAASSTTSMEVVKSVYNQGGERIAIRADHKSYSYAQLVSSAWEISNLLCKAGLKPIDGARSNGPLSGARIGIVAKPCFEFVAAVLATWFSGGVAVP LAVSYPESELLHVMNDSGISMVLSTEDYHEVMEKVASKCAAQFSLLPSAASISSGTSPNDLKNVGEMDALKGDDPALIIYTSGTTGKPKGALHTHNSVNS QVEFMPKFSVKGAWQRWRESYPENGGKSEDAITAFTGVPTMYNWLIQGYDSMDPDLQAASAFAARQLRLMMCGSSALPVPVLQRWETITGHRLLERYGMT EFVMAISNPLKGTRKAGTVGQPLPRVQVKIVQEGSDNDDTGVGEICVKSPSLFTEYWKLPQVTKESFTEDGFFKTGDAGKIDEEGYYVILGRKSADIMKV GGYKLSALEIESILLEHPSVGECCVLGLPDKDFGDAVVAIIVLNDECKKKQEEESSDALTLEGLREWAKDKLAPYKASYSLCLFFLLPPKKQESKPSLNM PLFSLQLPTKLCLWESLPRNAMGKVNKKELKKVLSPE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16170		AAE13	acyl activating enzyme 13, AMP...		Lus10035861 [exp]	0	1
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10036153 [exp]	2.4	0.8174
AT3G16170		AAE13	acyl activating enzyme 13, AMP...		Lus10025801 [exp]	8.2	0.8351
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10023613 [exp]	17.9	0.8172
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033338 [exp]	29.4	0.7788
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10030435 [exp]	54.1	0.7409
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025635 [exp]	58.3	0.7440
AT2G30990			Protein of unknown function (D...		Lus10033602 [exp]	65.0	0.7532
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10017610 [exp]	86.2	0.6873
AT2G27285			Coiled-coil domain-containing ...		Lus10009414 [exp]	107.6	0.7065
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Lus10011085 [exp]	111.2	0.6817

Compare expression of checked genes

Lus10035861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.