Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79820 376 / 2e-129 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) AT1G67300 328 / 2e-110 Major facilitator superfamily protein (.1.2) AT1G05030 184 / 4e-54 Major facilitator superfamily protein (.1) AT5G16150 174 / 2e-50 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT2G35740 104 / 7e-25 ATINT3 nositol transporter 3 (.1) AT4G16480 93 / 5e-21 ATINT4 inositol transporter 4 (.1) AT3G05155 90 / 2e-20 Major facilitator superfamily protein (.1) AT1G08930 90 / 4e-20 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT1G75220 90 / 5e-20 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT1G19450 89 / 1e-19 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025800 [exp] 394 / 4e-139 AT1G79820 357 / 2e-122 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Lus10034930 [exp] 317 / 3e-105 AT1G67300 615 / 0.0 Major facilitator superfamily protein (.1.2) Lus10030010 [exp] 177 / 1e-51 AT1G05030 645 / 0.0 Major facilitator superfamily protein (.1) Lus10028486 [exp] 173 / 9e-50 AT5G16150 780 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10009158 [exp] 172 / 1e-49 AT5G16150 781 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10035315 [exp] 172 / 1e-49 AT1G05030 673 / 0.0 Major facilitator superfamily protein (.1) Lus10033568 [exp] 166 / 3e-47 AT5G16150 763 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10017610 [exp] 153 / 5e-42 AT5G16150 756 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10033812 [exp] 91 / 2e-20 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G185300 [exp] 423 / 2e-147 AT1G79820 723 / 0.0 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Potri.018G083200 [exp] 367 / 1e-125 AT1G67300 710 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G060800 [exp] 187 / 2e-55 AT1G05030 752 / 0.0 Major facilitator superfamily protein (.1) Potri.004G097800 [exp] 167 / 1e-47 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.017G116400 [exp] 102 / 7e-25 AT5G16150 477 / 4e-167 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.013G027800 [exp] 94 / 2e-21 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 92 / 7e-21 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.006G015200 [exp] 92 / 2e-20 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.013G027700 [exp] 91 / 2e-20 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.016G010600 [exp] 89 / 2e-19 AT4G16480 825 / 0.0 inositol transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10035862 pacid=23140980 polypeptide=Lus10035862 locus=Lus10035862.g ID=Lus10035862.BGIv1.0 annot-version=v1.0 ATGAGAGGGCGTCACTTGGAGAATTCCTACTACACTTACAAGCGACTTTCGTCCAAGGATTTCGTAGATGCCTACGAGGACAGAGAAGATGCTTCAGATC CAACTGAGACGAGCAAGGATATCGGGAACCCTCCATGGAGGCGTTCTTTGATGCATATATTGGTGGCAACTATTTCTTCATTCTTATTTGGTTATCATCT TGGGGTAGTTAATGAGACGCTTGAAAGCATGTCTCTGGACCTTGGGTTTAGTGGGAATACAATGGCAGAAGGTGGTGCTTTTATCGGATCACTCTTCAGT GGTTGGGTTGCAGATGGTGTTGGCCGCCGCAGGGCATTTCAGCTTTGTGCCTTACCTATGATAATCGGAGCTTCAATGAGTGCCACAACAAATAGTCTAT GGGGCATGCTTCTTGGAAGGTTATTTGTCGGAACTGGAATGGGTCTTGGTCCGCCGGTAGCTGCTCTTTATGTAGCAGAGGTTTCCCCAGCTCATGTACG GGGTACTTATGGAAGCTTGACACAGACCGCAACATGTTTAGGACTTATGGGTTCTCTTTATATTGGGTTTCCAGCTAAGACGACTATGGGTTGGTGGCGC ATTTGCTTTTGGGTGTCTGTCATTCCTGCTGCATCTCTTGCTTTTCTGATGCAGTTTTGTGCAGAGAGTCCTTACTGGCTTTTAAAGAGAGGACGTAGTG CTGAAGCTGAAGTTGCATTTGAGAAAGTATTAGGAGCGTTGCATGTGAAATCTGCTATGGGAGAATTGTCCAAGTCGGACCGAGGAGATGAAGTCGAAAA TGCAGTATCGATGGGTATTCAAGCTATTGGAGCTACCTCGCTTGTGTCAAGCTCCCAGTCAGTGTATCTTTCAGTTGGAGGCATGTTGCTGTGA
AA sequence Show only first row Show all	>Lus10035862 pacid=23140980 polypeptide=Lus10035862 locus=Lus10035862.g ID=Lus10035862.BGIv1.0 annot-version=v1.0 MRGRHLENSYYTYKRLSSKDFVDAYEDREDASDPTETSKDIGNPPWRRSLMHILVATISSFLFGYHLGVVNETLESMSLDLGFSGNTMAEGGAFIGSLFS GWVADGVGRRRAFQLCALPMIIGASMSATTNSLWGMLLGRLFVGTGMGLGPPVAALYVAEVSPAHVRGTYGSLTQTATCLGLMGSLYIGFPAKTTMGWWR ICFWVSVIPAASLAFLMQFCAESPYWLLKRGRSAEAEVAFEKVLGALHVKSAMGELSKSDRGDEVENAVSMGIQAIGATSLVSSSQSVYLSVGGMLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	0	1
AT3G24715			Protein kinase superfamily pro...		Lus10025941 [exp]	1.4	0.9263
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	1.7	0.9306
AT2G42320			nucleolar protein gar2-related...		Lus10011304 [exp]	2.8	0.9174
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10034829 [exp]	3.0	0.9183
AT5G11980			conserved oligomeric Golgi com...		Lus10024994 [exp]	3.0	0.9021
AT1G80530			Major facilitator superfamily ...		Lus10017971 [exp]	5.3	0.9049
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10038355 [exp]	5.5	0.8950
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	6.5	0.9101
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	7.7	0.9119
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10005042 [exp]	7.7	0.8992

Compare expression of checked genes

Lus10035862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.