Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79850 123 / 1e-36 PDE347, CS17, PRPS17, ORE4, RPS17 PLASTID RIBOSOMAL SMALL SUBUNIT PROTEIN 17, PIGMENT DEFECTIVE 347, ribosomal protein S17 (.1) AT1G49400 49 / 4e-08 EMB1129 embryo defective 1129, Nucleic acid-binding, OB-fold-like protein (.1) AT3G18880 47 / 2e-07 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025799 [exp] 243 / 6e-84 AT1G79850 133 / 9e-41 PLASTID RIBOSOMAL SMALL SUBUNIT PROTEIN 17, PIGMENT DEFECTIVE 347, ribosomal protein S17 (.1) Lus10017467 [exp] 53 / 1e-09 AT3G18880 154 / 2e-50 Nucleic acid-binding, OB-fold-like protein (.1) Lus10028815 [exp] 52 / 2e-09 AT3G18880 154 / 4e-50 Nucleic acid-binding, OB-fold-like protein (.1) Lus10017993 [exp] 52 / 2e-09 AT3G18880 159 / 3e-52 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G184000 [exp] 114 / 6e-33 AT1G79850 139 / 1e-42 PLASTID RIBOSOMAL SMALL SUBUNIT PROTEIN 17, PIGMENT DEFECTIVE 347, ribosomal protein S17 (.1) Potri.006G080200 [exp] 55 / 1e-10 AT3G18880 155 / 1e-50 Nucleic acid-binding, OB-fold-like protein (.1) Potri.018G150100 [exp] 52 / 1e-09 AT1G49400 152 / 4e-49 embryo defective 1129, Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00366 [flax] [poplar] Ribosomal_S17 Ribosomal protein S17
Representative CDS sequence Show only first row Show all	>Lus10035863 pacid=23140971 polypeptide=Lus10035863 locus=Lus10035863.g ID=Lus10035863.BGIv1.0 annot-version=v1.0 ATGTCGCTCACATCTTCCCTCGCCATCTCCTCCTCCTCGTCGTGTCTCCTCAATGGCTCCTCCACTCCGCTCATTCGCCTCTCCAAACCCTCCTGTTCCA CCGTCGTCCTCCCAATCCGGGCAATGAAGACGTTGGAAGGGGTAGTCGTGAAGACTTCAAGAGACAAGACGGTGGCTGTGGAGGTGACTCGTCAGGTTCA GCATCCGAAATACCACAGAAGGGTCCGGATTAAGAAGCTCCTCCACGCACATGACCCGGAGAACAAGTTCCAAATTGGGGATCTTGTCCAGCTCGAAAGG AGCCGACCCATCAGCAAGACCAAGAGTTTCCTTGCCATCCCGGCTCCCCCTAGGGTAAGTAAGAAGGACAAGAAAGCCAGCGCTGAGTCCACTAAGGAGG AGCTTGAGATTCCTTTCCAATCGCAACAGTCTTAA
AA sequence Show only first row Show all	>Lus10035863 pacid=23140971 polypeptide=Lus10035863 locus=Lus10035863.g ID=Lus10035863.BGIv1.0 annot-version=v1.0 MSLTSSLAISSSSSCLLNGSSTPLIRLSKPSCSTVVLPIRAMKTLEGVVVKTSRDKTVAVEVTRQVQHPKYHRRVRIKKLLHAHDPENKFQIGDLVQLER SRPISKTKSFLAIPAPPRVSKKDKKASAESTKEELEIPFQSQQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10035863 [exp]	0	1
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10025302 [exp]	1.0	0.9663
AT5G65220			Ribosomal L29 family protein ...		Lus10019653 [exp]	4.0	0.9628
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10018192 [exp]	5.5	0.9575
AT3G54210			Ribosomal protein L17 family p...		Lus10000382 [exp]	5.9	0.9527
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10024430 [exp]	7.7	0.9441
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028698 [exp]	9.5	0.9419
AT2G21385			unknown protein		Lus10017494 [exp]	10.8	0.9502
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	11.3	0.9539
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10035036 [exp]	11.8	0.9511
AT2G33180			unknown protein		Lus10023686 [exp]	12.0	0.9442

Compare expression of checked genes

Lus10035863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.