Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79870 447 / 3e-159 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 269 / 4e-89 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 251 / 7e-82 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G68010 112 / 4e-28 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G17745 113 / 9e-28 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT4G34200 110 / 1e-26 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT3G19480 105 / 6e-25 D-3-phosphoglycerate dehydrogenase (.1) AT1G72190 100 / 4e-24 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT5G28310 92 / 1e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G14780 87 / 5e-19 FDH formate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025796 [exp] 598 / 0 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 402 / 3e-141 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 397 / 2e-139 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10037552 [exp] 385 / 1e-134 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036537 [exp] 268 / 2e-88 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10041393 [exp] 261 / 7e-86 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10006708 [exp] 258 / 9e-85 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10014133 [exp] 246 / 8e-80 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10041391 [exp] 117 / 3e-32 AT1G12550 131 / 3e-38 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G052700 [exp] 504 / 0 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G183700 [exp] 405 / 6e-143 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G113250 [exp] 270 / 3e-89 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.002G151100 [exp] 269 / 7e-89 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 266 / 4e-87 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 263 / 1e-86 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073500 [exp] 256 / 9e-84 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G119000 [exp] 252 / 2e-82 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.013G046150 [exp] 134 / 1e-38 AT1G79870 164 / 3e-50 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.004G175800 [exp] 114 / 1e-28 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10035866 pacid=23141029 polypeptide=Lus10035866 locus=Lus10035866.g ID=Lus10035866.BGIv1.0 annot-version=v1.0 ATGGAGTCGATCGGCGTCCTCATGACTTGCCCGCCCGTCCACCTACAGCTAGTCGAAGCCGTTGAGAAGCGCTTCACTCTCTACAAGCTCGACGGTGTCC CTGACAAGGTCCAGTTCTTGACTTCCCACAAGGATTCTATCCGCGCTGTCGTCGGGAACTCCGTCGCTGGAGCCGACGCGGAGCTGATCGACCAATTGCC GAAGCTGGAGATCGTCTCCAGTTTCAGCGTTGGCCTGGACAAGATTGATCTGGGGAAATGTAAGGAAAAGGGGATTAGGGTGACTAATACGCCCGACGTT CTGACCGACGATGTGGCCGATTTGGCTTTGGGACTGATGCTAGCGGTCCTCAGGAGGCTCTGTGAGAGCGATCGGTACGTCAGGACTGGCTTGTGGAAGA AGGGCGACTATAAATTGACTACCAAGTTCAGTGGGAAGACTGTGGGAATCATTGGTCTAGGCAGGATTGGAATGGCAATTGCGCAGAGAGCTGAAGCATT CAGCTGCCCAATCAGCTACTTCTCCAGATCACAGAAATCTGGCATTAGCTACAAGTACCATCCCACCGTCATTGACCTGGCTGCCAACTGTGACATCCTC GTAGTAGCATGCGCTCTAACGCCAGAGACCCGCCACATCGTCAACCGTGACGTCATGAACGCACTGGGCCCCAAAGGTGTCCTCATCAACATCGGGAGGG GGCCACATGTTGATGAGCAGGAGCTGGTGTCCGCACTAGTCGAAGGTCGTTTGGGCGGTGCTGGTCTGGACGTGTTCCAGGACGAACCAAACGTGCCGGA GGAGCTTTTCAAGCTTGAGAACGTGGTCCTGTTGCCTCACGTCGGAAGTGGCACGGTGGAGACCAGGCAAGCCATGGCTGACCTTGTTGTTGCCAACTTG GAAGCCCATTTCCTCAACAAGCCACTGTTAACTCCGGTGGTTTGA
AA sequence Show only first row Show all	>Lus10035866 pacid=23141029 polypeptide=Lus10035866 locus=Lus10035866.g ID=Lus10035866.BGIv1.0 annot-version=v1.0 MESIGVLMTCPPVHLQLVEAVEKRFTLYKLDGVPDKVQFLTSHKDSIRAVVGNSVAGADAELIDQLPKLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDV LTDDVADLALGLMLAVLRRLCESDRYVRTGLWKKGDYKLTTKFSGKTVGIIGLGRIGMAIAQRAEAFSCPISYFSRSQKSGISYKYHPTVIDLAANCDIL VVACALTPETRHIVNRDVMNALGPKGVLINIGRGPHVDEQELVSALVEGRLGGAGLDVFQDEPNVPEELFKLENVVLLPHVGSGTVETRQAMADLVVANL EAHFLNKPLLTPVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035866 [exp]	0	1
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10016645 [exp]	1.4	0.9433
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	2.0	0.9407
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Lus10022352 [exp]	2.4	0.9393
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10016538 [exp]	3.2	0.9226
AT1G80040			unknown protein		Lus10026000 [exp]	3.5	0.9022
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	4.5	0.9230
AT2G20760			Clathrin light chain protein (...		Lus10018480 [exp]	4.9	0.9223
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10007274 [exp]	5.2	0.9150
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	5.7	0.9211
AT5G41670			6-phosphogluconate dehydrogena...		Lus10032341 [exp]	5.9	0.9216

Compare expression of checked genes

Lus10035866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.