Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79870 389 / 2e-136 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 270 / 1e-89 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 227 / 2e-72 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G17745 113 / 8e-28 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT4G34200 105 / 4e-25 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT5G28310 99 / 3e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68010 100 / 6e-24 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT3G19480 100 / 4e-23 D-3-phosphoglycerate dehydrogenase (.1) AT1G72190 88 / 2e-19 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT5G14780 86 / 1e-18 FDH formate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025795 [exp] 568 / 0 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10037552 [exp] 390 / 2e-136 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025796 [exp] 384 / 3e-134 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 382 / 2e-133 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036537 [exp] 240 / 1e-77 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10041393 [exp] 236 / 9e-76 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10006708 [exp] 228 / 5e-73 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10014133 [exp] 216 / 3e-68 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10011442 [exp] 123 / 2e-34 AT1G79870 117 / 1e-32 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183700 [exp] 431 / 4e-153 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 402 / 9e-142 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 256 / 9e-84 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 243 / 3e-78 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151100 [exp] 241 / 4e-78 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G113250 [exp] 236 / 8e-76 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.003G119000 [exp] 231 / 6e-74 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073500 [exp] 222 / 2e-70 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.013G046150 [exp] 167 / 2e-51 AT1G79870 164 / 3e-50 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G022800 [exp] 110 / 8e-27 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10035867 pacid=23141082 polypeptide=Lus10035867 locus=Lus10035867.g ID=Lus10035867.BGIv1.0 annot-version=v1.0 ATGGAATCAATCGGCGTTCTTATGATGTGTCCAATGTACAGCTACCTGGAGCAAGAGCTCCAGTCCCGCTTCAGTCTCTTCAAACTATGGCAACAATCAC CCTCCCAATTGCCTAGATTCTTCGAATCCAATCAACACACCATAAAAGCAGTCGTCGGTGATGCTGGAGTTGGCGCGGATGCGAAGCTAATCGATGCATT GCCCAATTTGGAAATTGTGGCCAGTTTCAGCGTAGGTTTCGATAAAATTGATCTGGGTAAATGTGAGGAGAAAGGAATTAGGGTTACCAACACCCCGGAT GTGCTAACTGACGACGTTGCTGATCTGGGTATTGCGTTGATTATTGGGGTACTAAGAAAGATTTGTCCTTGTGATGAGTTTGTAAGGAGTGGTAAATGGA AACAAGGTGATTTTGAATTGACAACCAAGTTCAGCGGCAAATCAGTTGGAATAGTGGGGCTGGGGAGGATCGGTCCAGCAATAGCCAAGAGAGCTAAAGC TTTTGGCTGCTCTATAAGCTACCACTCCAGATCTCAAAAAAGGCCTTTCAAAGACTACAAATACTACGACAACATCATAGACTTGGCGAGATTCTGCAGC ATTCTTGTTGTATCATGCTCGCTGACAGAGGAAACCTACCACATCATCAATCGAGAGGTGATTGATGCATTGGGTCCTCAGGGCATCCTAATCAATGTCG GGAGAGGTGCACACGTAGATGAGCCGGAGCTCGTGTCAGCATTGCTCGAAGGTCGACTTGCTGGTGCAGGACTAGACGTGTATGAAAATGAACCAGAGGT GCCTGAAGCATTGATTGGTCTTGACAATGTCGTACTCCTACCCCACGTAGGGAGTGACACTGTAGAGACGTGCAAAGCAATGGCTGATCTTGTGATTGCT AATTTAGAGGCGCATTTCAGCAACAGACCCATTCTCACCCCAGTTTTATGA
AA sequence Show only first row Show all	>Lus10035867 pacid=23141082 polypeptide=Lus10035867 locus=Lus10035867.g ID=Lus10035867.BGIv1.0 annot-version=v1.0 MESIGVLMMCPMYSYLEQELQSRFSLFKLWQQSPSQLPRFFESNQHTIKAVVGDAGVGADAKLIDALPNLEIVASFSVGFDKIDLGKCEEKGIRVTNTPD VLTDDVADLGIALIIGVLRKICPCDEFVRSGKWKQGDFELTTKFSGKSVGIVGLGRIGPAIAKRAKAFGCSISYHSRSQKRPFKDYKYYDNIIDLARFCS ILVVSCSLTEETYHIINREVIDALGPQGILINVGRGAHVDEPELVSALLEGRLAGAGLDVYENEPEVPEALIGLDNVVLLPHVGSDTVETCKAMADLVIA NLEAHFSNRPILTPVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035867 [exp]	0	1
AT5G04920			EAP30/Vps36 family protein (.1...		Lus10028877 [exp]	4.0	0.7719
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	9.4	0.7395
AT4G10730			Protein kinase superfamily pro...		Lus10001677 [exp]	15.1	0.6695
AT3G06620			PAS domain-containing protein ...		Lus10040540 [exp]	16.0	0.7129
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10005501 [exp]	24.5	0.6805
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	25.2	0.7147
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	27.5	0.7041
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	30.1	0.7000
AT1G55630			Pentatricopeptide repeat (PPR)...		Lus10027465 [exp]	39.9	0.6395
AT3G06670			binding (.1.2)		Lus10037742 [exp]	40.4	0.6844

Compare expression of checked genes

Lus10035867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.