Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45688 166 / 1e-48 unknown protein AT3G24600 165 / 6e-47 Late embryogenesis abundant protein, group 2 (.1) AT5G42860 139 / 6e-39 unknown protein AT4G35170 113 / 3e-29 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G41990 96 / 9e-23 unknown protein AT3G08490 69 / 3e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025793 [exp] 488 / 2e-175 AT1G45688 221 / 5e-70 unknown protein Lus10023652 [exp] 236 / 2e-76 AT1G45688 183 / 2e-55 unknown protein Lus10034926 [exp] 233 / 4e-75 AT1G45688 182 / 5e-55 unknown protein Lus10010232 [exp] 174 / 5e-52 AT1G45688 416 / 3e-146 unknown protein Lus10029743 [exp] 154 / 3e-44 AT1G45688 301 / 4e-101 unknown protein Lus10009749 [exp] 150 / 2e-43 AT5G42860 256 / 2e-84 unknown protein Lus10022644 [exp] 146 / 2e-41 AT4G35170 279 / 4e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003341 [exp] 122 / 7e-32 AT2G41990 221 / 4e-70 unknown protein Lus10029519 [exp] 84 / 7e-18 AT3G08490 223 / 7e-71 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183600 [exp] 393 / 4e-138 AT1G45688 185 / 4e-56 unknown protein Potri.003G052900 [exp] 384 / 1e-134 AT1G45688 176 / 6e-53 unknown protein Potri.006G160100 [exp] 259 / 2e-85 AT3G24600 184 / 3e-54 Late embryogenesis abundant protein, group 2 (.1) Potri.002G124600 [exp] 183 / 1e-55 AT1G45688 284 / 1e-94 unknown protein Potri.007G045000 [exp] 177 / 3e-53 AT1G45688 273 / 4e-90 unknown protein Potri.014G026800 [exp] 173 / 7e-52 AT1G45688 301 / 2e-101 unknown protein Potri.004G180900 [exp] 155 / 3e-45 AT2G41990 256 / 1e-84 unknown protein Potri.009G140600 [exp] 154 / 1e-44 AT2G41990 232 / 5e-75 unknown protein Potri.009G061300 [exp] 86 / 5e-19 AT3G08490 209 / 7e-66 unknown protein Potri.001G267200 [exp] 77 / 8e-16 AT3G08490 196 / 6e-61 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10035869 pacid=23141259 polypeptide=Lus10035869 locus=Lus10035869.g ID=Lus10035869.BGIv1.0 annot-version=v1.0 ATGCATTCGGCGAAATCGGAGTCGGATATAACGAGTCTAGCTCCGTCGTCACCGTCCAGGTCGCCCAAGCGGCCTGTTTACTACGTGCAGAGCCCCTCGA GGGATTCACAGGATGGGGACAAGTCGTCGTCTTTGCAGCCCAGTCCGGTGGAGTCGCCGTCACACCCTTCGTACGGGCGGCACTCGAGGAACTCGTCTGG GAGCAGGTTTTCTGGGATATTCAGGTCTTCCTCAGGGAGGAAAGGGGCAAGGAAAGGGAGGAACGACCACCAGAAAGGTGGTAACGACAAAGGGTGGCCA GAGTGTAATGTAATAATGGAGGAAGGGGGTTACGATGATGATGAAGACAAGGTGTTTGTTAAAAGGTTACAGGCTTTACTTGCTCTCCTCACATTTGTCC TTTTGTTCACTGTCTTCTGCTTGATTCTTTGGGGAGCTAGCCGCCCCTACAAGGCAGAAATTGTAGTGAAGAGCTTGGCAGTGCATAACTTCTATATCGG AGAAGGTTCTGATTCTTCAGGTGTCCCGACGAAGATGCTGACTGTAAACGCGACATTGAAGATGAACATTTACAACCCTGCTAAAATATTTGGAATCCAT GTTAGCTCGACACCGATCAATCTCATATACTTTCAAATCCCAGTCGCAACTGGTCAGGTGAAGAAACACTACCAGCCAAGGAAGAGCAGAAGGACTATAT CAGTAGTGGTGGAAGGGAAGAAGGTACCGCTGTATGGAGCTGGATCGAGTTTGACGATGTCTGAAACAGCTGCGGTTGTTCCGCTGACATTGAAGTTTGA GATGAAATCGCGGGGTGATGTGGTGGGGAAGCTCGTAAGGACCAAGCATAGAGTTCAGATTTCCTGCCCTGTGGTTCTTGATTCAACAAAGTCTACACCC ATCAAGTTCAAGAAGAACTCCTGCATATATGGGTAG
AA sequence Show only first row Show all	>Lus10035869 pacid=23141259 polypeptide=Lus10035869 locus=Lus10035869.g ID=Lus10035869.BGIv1.0 annot-version=v1.0 MHSAKSESDITSLAPSSPSRSPKRPVYYVQSPSRDSQDGDKSSSLQPSPVESPSHPSYGRHSRNSSGSRFSGIFRSSSGRKGARKGRNDHQKGGNDKGWP ECNVIMEEGGYDDDEDKVFVKRLQALLALLTFVLLFTVFCLILWGASRPYKAEIVVKSLAVHNFYIGEGSDSSGVPTKMLTVNATLKMNIYNPAKIFGIH VSSTPINLIYFQIPVATGQVKKHYQPRKSRRTISVVVEGKKVPLYGAGSSLTMSETAAVVPLTLKFEMKSRGDVVGKLVRTKHRVQISCPVVLDSTKSTP IKFKKNSCIYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45688			unknown protein		Lus10035869 [exp]	0	1
AT1G45688			unknown protein		Lus10025793 [exp]	15.7	0.7712
AT2G46640			unknown protein		Lus10005993 [exp]	18.4	0.7388
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10023143 [exp]	19.9	0.7056
AT3G47300		SELT	SELT-like protein precursor (....		Lus10002479 [exp]	21.1	0.7288
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024319 [exp]	22.2	0.7176
AT5G27420		CNI1, ATL31	carbon/nitrogen insensitive 1 ...		Lus10043034 [exp]	22.6	0.7380
					Lus10002646 [exp]	23.5	0.6708
					Lus10008678 [exp]	23.7	0.6582
AT5G60680			Protein of unknown function, D...		Lus10021474 [exp]	26.4	0.7078
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	32.9	0.7251

Compare expression of checked genes

Lus10035869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.