Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16110 620 / 0 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) AT1G52260 607 / 0 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT5G60640 287 / 1e-89 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT3G54960 265 / 1e-81 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G21750 173 / 7e-48 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 156 / 1e-41 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT1G35620 73 / 2e-13 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT2G47470 68 / 1e-12 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G04980 50 / 2e-06 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 50 / 3e-06 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025792 [exp] 840 / 0 AT3G16110 553 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Lus10037403 [exp] 280 / 9e-87 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10021478 [exp] 264 / 3e-81 AT5G60640 740 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10022581 [exp] 262 / 2e-80 AT5G60640 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10042721 [exp] 169 / 5e-45 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10029681 [exp] 160 / 6e-43 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10018156 [exp] 158 / 3e-42 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10041307 [exp] 131 / 2e-32 AT5G60640 536 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10025679 [exp] 96 / 5e-21 AT1G21750 482 / 8e-169 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183500 [exp] 694 / 0 AT3G16110 650 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Potri.009G013600 [exp] 272 / 3e-84 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.005G179000 [exp] 166 / 2e-45 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.002G082100 [exp] 164 / 2e-44 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.008G040100 [exp] 127 / 2e-31 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.010G222100 [exp] 121 / 1e-29 AT3G54960 275 / 2e-87 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.013G111400 [exp] 83 / 6e-17 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.019G082400 [exp] 81 / 3e-16 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.014G122800 [exp] 66 / 3e-11 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 65 / 3e-11 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10035870 pacid=23141246 polypeptide=Lus10035870 locus=Lus10035870.g ID=Lus10035870.BGIv1.0 annot-version=v1.0 ATGACTTCTCGAAGACAACCCAGTTCAAGATTTGTCCTTTTCACTCTCACTCTCCTCTTGTTGGTCCAATTTACCGCATTCGTCGCTTCCACTGGAAACG ACGAGGATGAAGATATAGACGAACTGTTAGCCATTGATGAGCTAGAAGAAGAAGAGGGCACTGCGAATCATTATCATCATCAAGGAGAGCAGCAGAAGGA GGCTGAGGTATTGACCAAAGCGCAAAGGATAGTTCTTGAGCTTAATACGGACAGTGCTAACAAAGTTATAAGTGGGAATGAGTATGTTTTGGTTCTTGGG TATGCACCTTGGGATACCAGGAGCGCAGAGCTCATGCCTCAATTTGCTGAGGCTGCTAATAAGCTCAAGGAATTGGGAAGTCCAGTTGTGATGGCTAAGC TTGATGCTGAAAGGTATCCAAAGGCAGGTTCCGCACTTCAGATCAGAGGGTTTCCTACTTTGCTTCTCTTTGTCAACGGAAGCTCTCAGTCTTACACTGG TGGCTTTACTGGAGAGGATATCGTAATCTGGACCAGGAAAAAGACTGGGGATCCGGTTATCAGAGTGAATTCTGTTTCTGAAGCAGAGAAATTCCTCGAG ACGCATCATATATTCGTTCTTGGTCTCTTTGATAAGTTCCAGGGTTCTGATTATGAAGAATTTATCAAGACAGCAGTCTCTGACAACGAAATCCAGTTTG TTGAAGTGGGTGACCATGTAGTAGCTAAAGTTCTCTTCCCAGGCATCAAGTCCACTGGAAATTTCATTGGACTTGTGAAAAGTGAACCTGAAAGATATAC TGCATATGAAGGGGACTTTGAGATGGACAAGATACTGGAGTTTTTGGCTTACAATAAGTTTCCGTTGGTTACCAGGTTGACAGAGTTGAATTCTGTCTCT GTGTACTCTAGTCCGATAAAACTTCAGGTTATGATTTTTGGAGGGCATGATGATTTCGAAAGACTTATCAAGACTCTGCAACAGGTTGCAAAGAAGTTCA AATCAAAGATAATGTTCATGTATGTAGACATCGACGATGAGAACCTAGCAAAACCTTTCTTGACATTGTTTGGGCTTGAAGATTCAGATGGCACTTTGGT GACAGCTTTTGATAACCATATTAGCGCCAAATATCTGTTGGAAACTGAGCCAACTTCTGGGCACATAGAAGATTTCTGCTTAAGGCTTCTGGATGGGAGT TTTCCACCTTACTACAAATCACAACCAGCACCTGATAATAAGAACACAAGTGTCCTGGCAATCGTCGGAAAAACGTTTGATGACTTGGTTCTAAGTAATT CCAAGAATGTACTTCTGGAGATATTTACACCTTGGTGCATCAACTGTGAGACAACAAGCAAGCAGGTTGAGAAGCTTGCAAAGCATTTCAAAGGGTCGGG CAGCTTAGTCGTAGCAAGAATAGATGCTTCTGCAAATGAACATCCCAAGTTGCAGGTAACCGACTTCCCAGCGCTCATGTTCTACCCAGCCGAAGACAAA GCTAATCCGATCAAGCTTTCAACAAAATCCAGTGGAAAGGACTTGGCAGCAACCATCAATAAGCATTTGAAGTCTCAAGGAACCAAAGATGAGCTATAA
AA sequence Show only first row Show all	>Lus10035870 pacid=23141246 polypeptide=Lus10035870 locus=Lus10035870.g ID=Lus10035870.BGIv1.0 annot-version=v1.0 MTSRRQPSSRFVLFTLTLLLLVQFTAFVASTGNDEDEDIDELLAIDELEEEEGTANHYHHQGEQQKEAEVLTKAQRIVLELNTDSANKVISGNEYVLVLG YAPWDTRSAELMPQFAEAANKLKELGSPVVMAKLDAERYPKAGSALQIRGFPTLLLFVNGSSQSYTGGFTGEDIVIWTRKKTGDPVIRVNSVSEAEKFLE THHIFVLGLFDKFQGSDYEEFIKTAVSDNEIQFVEVGDHVVAKVLFPGIKSTGNFIGLVKSEPERYTAYEGDFEMDKILEFLAYNKFPLVTRLTELNSVS VYSSPIKLQVMIFGGHDDFERLIKTLQQVAKKFKSKIMFMYVDIDDENLAKPFLTLFGLEDSDGTLVTAFDNHISAKYLLETEPTSGHIEDFCLRLLDGS FPPYYKSQPAPDNKNTSVLAIVGKTFDDLVLSNSKNVLLEIFTPWCINCETTSKQVEKLAKHFKGSGSLVVARIDASANEHPKLQVTDFPALMFYPAEDK ANPIKLSTKSSGKDLAATINKHLKSQGTKDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52260		ATPDI3, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10035870 [exp]	0	1
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10010571 [exp]	4.6	0.7757
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10016549 [exp]	14.3	0.7602
AT1G73430			sec34-like family protein (.1....		Lus10000075 [exp]	19.5	0.7654
AT5G28850			Calcium-binding EF-hand family...		Lus10008193 [exp]	26.2	0.7475
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10013485 [exp]	31.3	0.7610
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10005890 [exp]	33.8	0.6716
AT1G73430			sec34-like family protein (.1....		Lus10001792 [exp]	36.3	0.7386
AT4G01210			glycosyl transferase family 1 ...		Lus10002154 [exp]	36.5	0.7153
AT1G73930			unknown protein		Lus10042970 [exp]	47.3	0.7389
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005101 [exp]	53.5	0.7270

Compare expression of checked genes

Lus10035870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.