Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15230 82 / 2e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025791 [exp] 218 / 2e-73 AT1G15230 90 / 3e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053500 [exp] 128 / 3e-38 AT1G15230 92 / 3e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035871 pacid=23141277 polypeptide=Lus10035871 locus=Lus10035871.g ID=Lus10035871.BGIv1.0 annot-version=v1.0 ATGGAAGCGAGTCAGGGCAAAGAAGCAACCGGGGGGCTGCTCCACCAGATCCTACCCCCGAGACTGGAGGATGCCGGCCTAGAAGACTGCGCGCTTCCTC CGGACTCCATCAAAGAAGCATTTCTCAAAGCCGCCTCCGCTGTAAAATCCCGTGCAACCTCCCTCTTCAACGACAACGAAGATGATTGCGTGCAGGATCC CTGGCCGGCGGAAGAGGCCAATGATGTCACTGATGATATTAATGTCGGTCTTCCACCTGTGGGCGGTGGTGCGGACGCGCTGGTGGGGATAAACGAGGGT TTAGATGAGAAGGGAAGCTGCGTGAAAGGCTTGGATTCGGTCGACAAGGACAAGGATCAAGTGGTGGTAGTCGGGGGAGAGGTGGATGATAGCGGTCCCT GCAAGGGTTTGGAAATTGGCGGAAAGGAGAAGAAGGATGAGATTGAGGATGATGAAGAAGAGAAAAAAGGACCAATTTTGACTGGAGGCTTTGTGTGA
AA sequence Show only first row Show all	>Lus10035871 pacid=23141277 polypeptide=Lus10035871 locus=Lus10035871.g ID=Lus10035871.BGIv1.0 annot-version=v1.0 MEASQGKEATGGLLHQILPPRLEDAGLEDCALPPDSIKEAFLKAASAVKSRATSLFNDNEDDCVQDPWPAEEANDVTDDINVGLPPVGGGADALVGINEG LDEKGSCVKGLDSVDKDKDQVVVVGGEVDDSGPCKGLEIGGKEKKDEIEDDEEEKKGPILTGGFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15230			unknown protein		Lus10035871 [exp]	0	1
AT3G62580			Late embryogenesis abundant pr...		Lus10010016 [exp]	2.4	0.8247
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10024687 [exp]	2.8	0.8215
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Lus10028250 [exp]	5.7	0.7731
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10040141 [exp]	6.3	0.7783
					Lus10009043 [exp]	8.9	0.7740
AT4G39520			GTP-binding protein-related (....		Lus10006801 [exp]	10.4	0.8029
AT5G20900	ZIM	TIFY3B, JAZ12	jasmonate-zim-domain protein 1...		Lus10011929 [exp]	12.5	0.7242
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10019028 [exp]	12.6	0.8065
AT5G58530			Glutaredoxin family protein (....		Lus10040949 [exp]	13.0	0.7712
AT5G41020	MYB		myb family transcription facto...		Lus10024036 [exp]	15.2	0.7984

Compare expression of checked genes

Lus10035871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.