Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52280 397 / 3e-143 AtRABG3d RAB GTPase homolog G3D (.1) AT3G16100 389 / 6e-140 AtRABG3c, AtRab7D RAB GTPase homolog G3C (.1) AT3G18820 377 / 3e-135 RAB71, AtRABG3f, AtRab7B RAB GTPase homolog G3F (.1) AT1G49300 367 / 5e-131 ATRAB7, ATRABG3E ARABIDOPSIS RAB GTPASE HOMOLOG G3E, ARABIDOPSIS RAB GTPASE HOMOLOG 7, RAB GTPase homolog G3E (.1.2) AT1G22740 311 / 3e-109 RAB75, RAB7, AtRABG3b RAB GTPase homolog G3B (.1) AT4G09720 311 / 3e-109 AtRABG3a RAB GTPase homolog G3A (.1.2.3.4) AT2G21880 278 / 7e-96 AtRab7A, AtRABG2 ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB GTPase homolog 7A (.1.2) AT5G39620 212 / 6e-70 AtRABG1 RAB GTPase homolog G1 (.1) AT2G44610 140 / 1e-41 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT1G28550 134 / 3e-39 AtRABA1i RAB GTPase homolog A1I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040468 [exp] 375 / 1e-134 AT3G18820 403 / 2e-145 RAB GTPase homolog G3F (.1) Lus10042328 [exp] 342 / 3e-121 AT3G18820 367 / 3e-131 RAB GTPase homolog G3F (.1) Lus10023582 [exp] 313 / 2e-110 AT3G18820 330 / 4e-117 RAB GTPase homolog G3F (.1) Lus10028719 [exp] 294 / 2e-102 AT4G09720 341 / 5e-121 RAB GTPase homolog G3A (.1.2.3.4) Lus10025790 [exp] 291 / 3e-101 AT1G52280 257 / 5e-88 RAB GTPase homolog G3D (.1) Lus10006059 [exp] 281 / 1e-97 AT4G09720 323 / 4e-114 RAB GTPase homolog G3A (.1.2.3.4) Lus10043349 [exp] 136 / 5e-40 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10019501 [exp] 136 / 5e-40 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10005890 [exp] 131 / 4e-38 AT3G46060 396 / 2e-142 RAB GTPase homolog 8A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053400 [exp] 389 / 5e-140 AT1G52280 395 / 2e-142 RAB GTPase homolog G3D (.1) Potri.009G115000 [exp] 385 / 3e-138 AT3G18820 408 / 2e-147 RAB GTPase homolog G3F (.1) Potri.001G182900 [exp] 383 / 1e-137 AT3G16100 394 / 7e-142 RAB GTPase homolog G3C (.1) Potri.004G153400 [exp] 383 / 1e-137 AT3G18820 405 / 2e-146 RAB GTPase homolog G3F (.1) Potri.002G062400 [exp] 324 / 4e-114 AT4G09720 375 / 1e-134 RAB GTPase homolog G3A (.1.2.3.4) Potri.005G198800 [exp] 313 / 5e-110 AT4G09720 370 / 2e-132 RAB GTPase homolog G3A (.1.2.3.4) Potri.005G085300 [exp] 284 / 3e-98 AT4G09720 291 / 3e-101 RAB GTPase homolog G3A (.1.2.3.4) Potri.007G079700 [exp] 233 / 1e-78 AT4G09720 272 / 3e-94 RAB GTPase homolog G3A (.1.2.3.4) Potri.002G135500 [exp] 138 / 6e-41 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.001G080400 [exp] 136 / 3e-40 AT1G02130 387 / 2e-139 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10035872 pacid=23141053 polypeptide=Lus10035872 locus=Lus10035872.g ID=Lus10035872.BGIv1.0 annot-version=v1.0 ATGGCTTCTCGTCGGCGGATGCTCCTCAAGGTCATTATTCTCGGCGATAGCGGGGTAGGCAAAACTTCACTGATGAATCAGTATGTAAATCGAAAGTTTA ACAATCAGTACAAGGCGACGATAGGAGCTGATTTCCTCACAAAGGAAGTTCAGTTTGAGGACAGATTGTTCACATTGCAGATATGGGATACTGCCGGTCA AGAAAGATTTCAAAGCCTTGGTGTTGCTTTCTACCGGGGTGCAGACTGTTGTGTTCTGGTTTATGATGTAAACGTGATGAAATCATTTGATAATCTTAAT AATTGGAGGGAAGAATTCCTGCTTCAGGCTAGTCCACCTGATCCAGAAAACTTCCCATTTGTTGTGCTAGGAAATAAGGTAGATATCGACGGTGGCAATA GTCGAGTGGTTTCTGAAAAGAAAGCAAAGGCGTGGTGTGCTTCAAAAGGAAACATACCCTACTTTGAGACTTCTGCAAAAGAAGGATTCAACGTGGATGC TGCTTTCGAGTGCATAGCAAAGAATGCGCTTAAGAATGAACCAGAAGAGGAAATGTATCTACCTGACACCATTGATGTTGGAGTTGGAGGGCAGCAACAG AGATCCACAGGCTGTGAATGTTGA
AA sequence Show only first row Show all	>Lus10035872 pacid=23141053 polypeptide=Lus10035872 locus=Lus10035872.g ID=Lus10035872.BGIv1.0 annot-version=v1.0 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFNNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN NWREEFLLQASPPDPENFPFVVLGNKVDIDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIAKNALKNEPEEEMYLPDTIDVGVGGQQQ RSTGCEC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Lus10035872 [exp]	0	1
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10025639 [exp]	2.6	0.8746
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10018057 [exp]	4.2	0.8620
AT1G53400			Ubiquitin domain-containing pr...		Lus10005423 [exp]	5.5	0.8363
AT5G50720		ATHVA22E	ARABIDOPSIS THALIANA HVA22 HOM...		Lus10032557 [exp]	6.9	0.8475
AT1G33780			Protein of unknown function (D...		Lus10001286 [exp]	10.2	0.8597
AT3G45620			Transducin/WD40 repeat-like su...		Lus10034751 [exp]	11.7	0.8449
AT2G23940			Protein of unknown function (D...		Lus10041903 [exp]	11.8	0.8453
AT1G01230			ORMDL family protein (.1)		Lus10005980 [exp]	13.4	0.8421
AT5G55290			ATPase, V0 complex, subunit E ...		Lus10032570 [exp]	13.7	0.8327
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	15.7	0.8337

Compare expression of checked genes

Lus10035872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.