Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65210 456 / 3e-161 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT5G10030 448 / 5e-158 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G77920 346 / 1e-117 bZIP bZIP transcription factor family protein (.1) AT1G22070 340 / 3e-115 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G06950 303 / 1e-101 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT1G68640 299 / 3e-98 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT3G12250 293 / 6e-98 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06839 285 / 4e-93 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT1G08320 281 / 2e-92 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06960 276 / 4e-91 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025789 [exp] 687 / 0 AT5G65210 402 / 4e-140 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10011445 [exp] 628 / 0 AT5G65210 449 / 2e-158 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10037550 [exp] 626 / 0 AT5G65210 444 / 3e-155 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10042005 [exp] 370 / 3e-127 AT1G77920 428 / 5e-150 bZIP transcription factor family protein (.1) Lus10018009 [exp] 370 / 7e-127 AT1G77920 424 / 2e-148 bZIP transcription factor family protein (.1) Lus10009055 [exp] 359 / 9e-123 AT1G77920 442 / 2e-155 bZIP transcription factor family protein (.1) Lus10031349 [exp] 337 / 2e-114 AT1G77920 429 / 1e-150 bZIP transcription factor family protein (.1) Lus10024140 [exp] 314 / 1e-105 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 312 / 5e-105 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085700 [exp] 516 / 0 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.005G082000 [exp] 501 / 8e-179 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.005G170500 [exp] 404 / 7e-141 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.002G090700 [exp] 390 / 3e-135 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.007G079900 [exp] 312 / 4e-106 AT5G10030 339 / 5e-117 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) Potri.016G036500 [exp] 311 / 6e-103 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.006G039000 [exp] 309 / 7e-102 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.001G029800 [exp] 308 / 2e-101 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.003G194600 [exp] 306 / 9e-101 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.008G118300 [exp] 303 / 7e-100 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10035873 pacid=23140995 polypeptide=Lus10035873 locus=Lus10035873.g ID=Lus10035873.BGIv1.0 annot-version=v1.0 ATGAACTCCTCGTCAACCCATTTTGTGACTTCGGGAGGGATGGACATGTATGATCATGTGCAACAGCTCAGCATGTGGGGTGAAACGTTCCGGAGTAATG GAAGTCCTAATGCATTGACATCAATCCTTATACCAAATGCATCCCAGTCTTTGATTATAACAGCAGATATGAAACTGGACAATCAGTCAGAAGATACTTC AAATGGTACTCCTGGACCTCTTTACAAATATGACCAAGAAGTGACTAAATCCAGTGATAAGGTTCAAAGACGTCTTGCCCAAAATCGCGAGGCTGCTCGT AAGAGTCGTCTACGTAAAAAGGCATATGTGAAGCAATTAGAATCAAGTCGTTTGAAGTTGGTTCAATTGGAGCAGGAGCTTGACAAAGCCAGACAACAGG CATGCTTTTATGGTTCATATGTAGGCAGTGGAATTGAAGGTAATCATGTAGGGTCGAATGGAGCCATAAACTCAGGAATTGCAACATTTGAGATGGAGTA TGGACATTGGTTAGAAGAGCAGCAGAAGCATGTTTGTGAACTGCGGGCTGCTCTAAATTCTGATATAGGTGATGGAGACATTCGCATACTTGTAGAAGCT AGTTTGAACCACTATTACGAACTTTTCCGCATGAAGGGAGCAGCTGCAAAGGCTGATGTTTTATATGTCATGTCTGGCCTCTGGAAGTCTCCAGCAGAAA GGTTTTTCCTCTGGATAGGAGGGTTTCGTCCTTCAGAACTTATTAAGGTTTTAAGGCCTCAAATAGAACCCTTGGCAGAACCACAACTTCAGAATATATG CAACCTTGGACAATTATGCCAACAAGCAGAAGACGCGCTATCACAAGGCATGGAGAGACTCCAGCAAACTCTTGCCCAGAGTGTAGCGGATAGTCAACTC GGAGAAGCAAGTTACTCGCCGCAGATAGATACTGCCATGGAGAAGTTAGATTCGTTGATCCGCTTCGTTCGGCAGGCTGATCACCTGCGAAAAGTGGCGC TGGTACAGGTGTCTCAGATACTGACACCGCGCCAGGCAGCTCGAGGTCTGCTTGCTCTTGGAGAATACTTTGACAGACTAAAGTCTTTGAGTCGAGTTTG GGAAACAAATAGTCCACGTGAGCAAGCATAG
AA sequence Show only first row Show all	>Lus10035873 pacid=23140995 polypeptide=Lus10035873 locus=Lus10035873.g ID=Lus10035873.BGIv1.0 annot-version=v1.0 MNSSSTHFVTSGGMDMYDHVQQLSMWGETFRSNGSPNALTSILIPNASQSLIITADMKLDNQSEDTSNGTPGPLYKYDQEVTKSSDKVQRRLAQNREAAR KSRLRKKAYVKQLESSRLKLVQLEQELDKARQQACFYGSYVGSGIEGNHVGSNGAINSGIATFEMEYGHWLEEQQKHVCELRAALNSDIGDGDIRILVEA SLNHYYELFRMKGAAAKADVLYVMSGLWKSPAERFFLWIGGFRPSELIKVLRPQIEPLAEPQLQNICNLGQLCQQAEDALSQGMERLQQTLAQSVADSQL GEASYSPQIDTAMEKLDSLIRFVRQADHLRKVALVQVSQILTPRQAARGLLALGEYFDRLKSLSRVWETNSPREQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10035873 [exp]	0	1
AT1G44770			unknown protein		Lus10014131 [exp]	1.7	0.9801
AT1G13195			RING/U-box superfamily protein...		Lus10006253 [exp]	2.2	0.9779
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10028933 [exp]	4.0	0.9780
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	4.2	0.9785
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	4.5	0.9792
AT1G04970			lipid-binding serum glycoprote...		Lus10033808 [exp]	4.7	0.9721
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10022727 [exp]	4.9	0.9720
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10000733 [exp]	5.5	0.9701
AT1G68820			Transmembrane Fragile-X-F-asso...		Lus10035057 [exp]	6.2	0.9606
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10036274 [exp]	6.3	0.9682

Compare expression of checked genes

Lus10035873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.