Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04770 892 / 0 ABCI8, ATNAP1, LAF6, ATABC1 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) AT5G44316 619 / 0 ABCI9 ATP-binding cassette I9, Stabilizer of iron transporter SufD superfamily protein (.1) AT1G32500 92 / 2e-19 ABCI7, ATNAP6 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025788 [exp] 1050 / 0 AT4G04770 914 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10034750 [exp] 1004 / 0 AT4G04770 907 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10010168 [exp] 68 / 1e-11 AT1G32500 550 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Lus10017374 [exp] 68 / 1e-11 AT1G32500 550 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G016900 [exp] 947 / 0 AT4G04770 924 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Potri.001G144500 [exp] 76 / 2e-14 AT1G32500 535 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Potri.003G089700 [exp] 70 / 1e-12 AT1G32500 544 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01458 [flax] [poplar] SUFBD SUF system FeS cluster assembly, SufBD
Representative CDS sequence Show only first row Show all	>Lus10035874 pacid=23141013 polypeptide=Lus10035874 locus=Lus10035874.g ID=Lus10035874.BGIv1.0 annot-version=v1.0 ATGGCATCTCTTTTGACCAACGGTATCCCCCCCTTCTCTTCCCACCCTATCTCCGATTCATCGAAGCTCCTCGTCAAACCCTTCTTTTCAATTTCAACCC CTTCCACCAGGATACGAGCAGATCTCACCGATTCAGCTACTCTGTCTTCTTCTTCTTCTTCTTCAACTTCTACTCTTACCTCCTCCTCCGATGATAAAAT CAAGGAAATCCTTCGCAACCGCGATTACAAGGAGAAATTCGGCTTTAATGTCGATATCGACTCCTTCTCCATCCCCAAGGGTCTTTCCGAAGATACAATC AGGTCCATTTCCAAGTTGAAAGACGAGCCTGACTGGATGCTTGATTTTAGGTTGAAAGCTTTTCAAAAATTCTTGCTTATGAAAGAGCCTAACTGGTCTG ATAATCGATACCCACCGATTAACTTCCAAGATCTTTGCTATTATTCTGCTCCAAAGAAGAAGCCCACTTTGAATAGTCTTGATGAAGCTGACCCGGAGCT CCTTAAGTACTTCGATAGGCTGGGTGTGCCTCTCAATGAGCAGAATAGATTAGCTAATGTTGCTGTTGATGCTGTTCTTGATAGCGTATCCATAGCTACA ACGCACAGGAAGACTTTAGAGAAGTCTGGTGTTATCTTTTGTTCTATATCTGAGGCTGTGCAGAAGTATCCGGATTTGGTGAAGAAGTATTTGGGGAAGG TTGTCCCAAGTGAGGACAACTATTATGCAGCTCTTAATTCTGCAGTGTTTAGTGATGGTTCGTTTCTCTATATACCAAAGGATACTAAATGTCCCATGCA GATTTCCACCTACTTTAGAATCAACGCCATGGAAACGGGCCAGTTTGAGAGGACTTTGATTGTTGCTGATGATCGTAGCTTTGTTGAGTACTTGGAGGGT TGTACTGCTCCTTCCTATGATACTAACCAACTTCATGCAGCTGTTGTTGAGTTATACTGTGCTGAGAGTGCTGAGATTAAATATTCCACAGTGCAGAACT GGTATGCTGGTGATGAGGAAGGGAAAGGCGGCATTTATAACTTTGTTACCAAGCGTGGAGTTTGTGCTGGGGATCGATCTAAGATATCGTGGACTCAGGT GGAGACAGGTTCTGCAATTACTTGGAAGTACCCTAGTGTTGTCCTGGAAGGAGATAACACTGTAGGGGAGTTCTATTCAGTTGCTTTGACAAATAATTAC CAGCAGGCAGATACAGGGACCAAGATGATCCACAAGGGTAAAAACACCAAAAGTCGAATTATATCAAAGGGTATCTCGGTTGGCCATTCAAGAAACTGTT ACAGGGGGCTTGTCCAGATTCAATCGAAAGCAGAAAATGCCCGCAATTCATCTCAGTGTGACTCGATGCTTATTGGTGATACTGCTGCTGCCAATACCTA TCCTTATATCCAGGTGAAGAACCCAACAGCAAGGGTGGAACACGAAGCTAGCACTTCGAAAATCGGAGAGGATCAGCTGTTCTACTTTCAGCAGAGGGGG ATAGACTACGAAAGAGCAATGGCAGCAATGATATCAGGGTTTTGCAGAGATGTGTTCAATGAGCTTCCTGATGAATTTGGTGCTGAGGTGAATCAGCTAA TGAGCTTGAAGCTTGAAGGGTCCGTCGGTTAA
AA sequence Show only first row Show all	>Lus10035874 pacid=23141013 polypeptide=Lus10035874 locus=Lus10035874.g ID=Lus10035874.BGIv1.0 annot-version=v1.0 MASLLTNGIPPFSSHPISDSSKLLVKPFFSISTPSTRIRADLTDSATLSSSSSSSTSTLTSSSDDKIKEILRNRDYKEKFGFNVDIDSFSIPKGLSEDTI RSISKLKDEPDWMLDFRLKAFQKFLLMKEPNWSDNRYPPINFQDLCYYSAPKKKPTLNSLDEADPELLKYFDRLGVPLNEQNRLANVAVDAVLDSVSIAT THRKTLEKSGVIFCSISEAVQKYPDLVKKYLGKVVPSEDNYYAALNSAVFSDGSFLYIPKDTKCPMQISTYFRINAMETGQFERTLIVADDRSFVEYLEG CTAPSYDTNQLHAAVVELYCAESAEIKYSTVQNWYAGDEEGKGGIYNFVTKRGVCAGDRSKISWTQVETGSAITWKYPSVVLEGDNTVGEFYSVALTNNY QQADTGTKMIHKGKNTKSRIISKGISVGHSRNCYRGLVQIQSKAENARNSSQCDSMLIGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRG IDYERAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10035874 [exp]	0	1
AT3G05010			Protein of unknown function, t...		Lus10033835 [exp]	1.0	0.8972
AT3G29270			RING/U-box superfamily protein...		Lus10030699 [exp]	3.5	0.8529
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10039323 [exp]	3.5	0.8379
AT2G14910			unknown protein		Lus10013888 [exp]	4.6	0.8359
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Lus10018367 [exp]	7.1	0.8199
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10041799 [exp]	7.7	0.8410
AT3G09830			Protein kinase superfamily pro...		Lus10013812 [exp]	8.4	0.8257
AT2G19460			Protein of unknown function (D...		Lus10011939 [exp]	8.7	0.8426
AT4G25150			HAD superfamily, subfamily III...		Lus10013478 [exp]	8.7	0.8161
AT1G61065			Protein of unknown function (D...		Lus10018474 [exp]	8.7	0.8240

Compare expression of checked genes

Lus10035874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.