Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52510 541 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G12830 156 / 8e-44 alpha/beta-Hydrolases superfamily protein (.1) AT1G54990 44 / 0.0001 RGR1, AXR4 REDUCED ROOT GRAVITROPISM 1, REDUCED ROOT GRAVITROPISM, AUXIN RESISTANT 4, alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 41 / 0.0003 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025787 [exp] 676 / 0 AT1G52510 543 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10002142 [exp] 156 / 1e-43 AT4G12830 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10008747 [exp] 83 / 4e-17 AT4G12830 326 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 55 / 3e-08 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10011204 [exp] 55 / 3e-08 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 55 / 5e-08 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10038312 [exp] 50 / 1e-06 AT4G02340 202 / 4e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10008684 [exp] 50 / 1e-06 AT4G02340 369 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10005858 [exp] 49 / 2e-06 AT4G02340 192 / 3e-59 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G201500 [exp] 557 / 0 AT1G52510 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G175700 [exp] 167 / 6e-48 AT4G12830 545 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 47 / 1e-05 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 47 / 1e-05 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 47 / 1e-05 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 45 / 7e-05 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 44 / 9e-05 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 44 / 9e-05 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G041800 [exp] 44 / 0.0002 AT1G73480 510 / 3e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 43 / 0.0002 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10035875 pacid=23141245 polypeptide=Lus10035875 locus=Lus10035875.g ID=Lus10035875.BGIv1.0 annot-version=v1.0 ATGATTCGGATGGCTCCCCTCCTCCATCCTTCTTCTTCGTCTCTTTCACTCTCCCAGAAAACTACCCAACTATGTTTTCCAACACTCATCAGTAACAGAG TTACTGCAACCACTTCCAGCAGAAGAATCAGCACAAGTTTGACGGCGAGGGCAAGCAAAGACGACGAAGACGAAGCAGCAGCACCGGATTTTAATCCATT CGGTTTCGTGACAGATAACCCATCCAGCCGCTCCGCCATTCAGCTGCCCGAGTCACCTGCCCAGGATGGCAATGTCGGCCAGATGCTCTATCGGATAGAA GATAAAGGGAGGGAGTTTGGCCAGTATGTTGATGCTGGTCCTGACAAGTTGAGGTGGTTCGTCAGAGAAACTGGATCACCCGATACTCGAAGGGGAACAA TTCTGTTTCTCCATGGCGCTCCAACTCAATCTTTTAGCTACAGAGTTGTTATGTCCCAGATGTCGGATTCCGGGTTCCATTGCTTGGCACCTGACTGGAT AGGGTTTGGTTTCAGTGACATGCCACAGCCTGGATATGGATTCGATTATACAGAGAAGGAGTTCCATGAGGCTTTGGATGATTTGCTTATTGAACTAAAA GTCAACACTCCTTTATTCCTTGTAGTTCAGGGATTTCTTGTAGGTTCTTATGGACTGACTTGGGCATTGAAAAATGCAAGCAAGATCTCAAAACTTGCTA TCTTAAATACACCTTTGACTGTTTCATCTCCTGTTCCTGGACTGTTCCAAAAGTTGAGGATCCCGCTCTTTGGTGAATTCACCTGCCAGAATGCTATAAC AGCTGAGCGCTTTATCGAAGCAGGTAGCCCCTATGTTCTGAAGACAGAGAAGGCTGATGTTTATAGATTGCCATACCTTGCTAGTGGCGCACCGGGATTC GCTCTGCTGGAGGCAGCAAGGAAAATTAATTTCAATAACGTTTTAAGTGAAGTGGCCAGTGGGCTGACATCTGAAAGGTGGGATAAGCCAATACTTGTAG CTTGGGGGATAGCAGACAAGCATCTACCTCAGTCTGTGGCGGAGGAGTTCCAGAAGGCGAATCCTCGTAACATCAAGCTTAAGTTGATTGAAGGAGCTGG CCACATGCCTCAAGAGGACTGGTAA
AA sequence Show only first row Show all	>Lus10035875 pacid=23141245 polypeptide=Lus10035875 locus=Lus10035875.g ID=Lus10035875.BGIv1.0 annot-version=v1.0 MIRMAPLLHPSSSSLSLSQKTTQLCFPTLISNRVTATTSSRRISTSLTARASKDDEDEAAAPDFNPFGFVTDNPSSRSAIQLPESPAQDGNVGQMLYRIE DKGREFGQYVDAGPDKLRWFVRETGSPDTRRGTILFLHGAPTQSFSYRVVMSQMSDSGFHCLAPDWIGFGFSDMPQPGYGFDYTEKEFHEALDDLLIELK VNTPLFLVVQGFLVGSYGLTWALKNASKISKLAILNTPLTVSSPVPGLFQKLRIPLFGEFTCQNAITAERFIEAGSPYVLKTEKADVYRLPYLASGAPGF ALLEAARKINFNNVLSEVASGLTSERWDKPILVAWGIADKHLPQSVAEEFQKANPRNIKLKLIEGAGHMPQEDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	0	1
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10025787 [exp]	1.0	0.9722
AT5G35970			P-loop containing nucleoside t...		Lus10024974 [exp]	1.4	0.9591
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10018280 [exp]	2.4	0.9335
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	2.8	0.9309
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10031540 [exp]	3.0	0.9291
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031716 [exp]	3.7	0.9327
AT1G33100			MATE efflux family protein (.1...		Lus10005685 [exp]	5.4	0.9013
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	6.2	0.9447
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	6.6	0.9441
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10037694 [exp]	7.8	0.8848

Compare expression of checked genes

Lus10035875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.