Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52500 390 / 2e-134 ATMMH-2, ATMMH-1, FPG-2, ATFPG-2, FPG-1, ATFPG-1 FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 2, A. THALIANA FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1, MUTM homolog-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025786 [exp] 112 / 3e-29 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G031100 [exp] 404 / 1e-139 AT1G52500 446 / 5e-156 FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 2, A. THALIANA FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1, MUTM homolog-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01149 [flax] [poplar] Fapy_DNA_glyco Formamidopyrimidine-DNA glycosylase N-terminal domain CL0303 [flax] [poplar] H2TH PF06831 [flax] [poplar] H2TH Formamidopyrimidine-DNA glycosylase H2TH domain
Representative CDS sequence Show only first row Show all	>Lus10035876 pacid=23141204 polypeptide=Lus10035876 locus=Lus10035876.g ID=Lus10035876.BGIv1.0 annot-version=v1.0 ATGCCGGAGCTACCGGAGGTGGAGGCGGCGAGAAGAGCTCTGGAGGAGCATTGCTTGGGGAAAAAAATTATTAAAGCCGTCGTCGCCGATGATTCCAAAG TAATCGACGGCATCTCTCCCTCGGATTTACAATCCGCTCTCGTCGGCAAAACTATAGTCGCTGCCCTTCGCAAGGGCAAAAATATGTGGCTGAAGCTCGA TGCCCCTCCTTTCCCTTCCTTCCAGTTTGGGATGACAGGTGCTGTGTATATAAAGGGAGTGGCTGTCACTGAGTCTGCGGTAAAGGATACTGATGAGTGG CCTTCCAAGTTCTCAAAGCTCTTCGTTGAATTAGATAATGGGGTGGAGTTCTCTTTTACGGACAAGAGGCGGCTAGCCAAAATCCGCTTGCTCAATGATC CAGCTTCTGTACCCCCAGTATCCGAGCTTGGTCCTGATGCACTTCTGCAGCCAATGACAGTTGATGAACTTCACAAAGCATTAAGCAAAAAGAAAGTTGG AATTAAGGCTCTTTTACTTGATCAGGCTAGAATTCATCCTCAGCAGAGTTCCTCCAGCTTGTCTAAAGAATGTTGTGAAACTTTACACAAGTGCATCAAG CAGGTTGTAGAATATGCAGTTGAAGTTGATGCTGTATCGAGCTGCTTTCCACTTGAGTGGTTGTTTCATTATCGTTGGGGCAAAAAGCCTGGAAAAGTTA TTGAGCAAGCAATAGAAGTAGGGGCGGACAGTAGTCAGTTCCCCAGTAACTGGTTATTTCATTCCCGTGATAAGAAACCTGGCAAGGCATTCGTTGACGG GAAGACAATTGAATTTATGACAGCTGGAGGGAGGACCACTGCTTATGTACCTGAATTGCAAAAACTAACTGGAGATCAGGCTGGGAAAGAGCGGTCAACA TCCAAGGAGAAACCTTTGAAGAGAAAGAAGGGAAAGAATGATGATATTGATGAGGATGGTGAAATGGAATCAGGAAATGAGGAGGAGAAAGCCTCGGTGA AGGCTAGACCCAAAAGAGAAGTGAAACCCAGAGGTGGTAATGCCAAGGAGACGAGCGAGAAAAACGCAGACGACGATGATGATAGTGATGAAGATATTGA CAGTAGTGAAGATCAAAACAAGAAATCTGGGAAGACAAGCAATAGAAAGCAAAGGAAGGCAGGGAAAGCATCAAAAGGAAAGATGAAGAAGTCGAAGAAG TAA
AA sequence Show only first row Show all	>Lus10035876 pacid=23141204 polypeptide=Lus10035876 locus=Lus10035876.g ID=Lus10035876.BGIv1.0 annot-version=v1.0 MPELPEVEAARRALEEHCLGKKIIKAVVADDSKVIDGISPSDLQSALVGKTIVAALRKGKNMWLKLDAPPFPSFQFGMTGAVYIKGVAVTESAVKDTDEW PSKFSKLFVELDNGVEFSFTDKRRLAKIRLLNDPASVPPVSELGPDALLQPMTVDELHKALSKKKVGIKALLLDQARIHPQQSSSSLSKECCETLHKCIK QVVEYAVEVDAVSSCFPLEWLFHYRWGKKPGKVIEQAIEVGADSSQFPSNWLFHSRDKKPGKAFVDGKTIEFMTAGGRTTAYVPELQKLTGDQAGKERST SKEKPLKRKKGKNDDIDEDGEMESGNEEEKASVKARPKREVKPRGGNAKETSEKNADDDDDSDEDIDSSEDQNKKSGKTSNRKQRKAGKASKGKMKKSKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52500		ATMMH-2, ATMMH-...	FORMAMIDOPYRIMIDINE-DNA GLYCOS...		Lus10035876 [exp]	0	1
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10036074 [exp]	2.0	0.8392
AT3G27050			unknown protein		Lus10032042 [exp]	5.3	0.8250
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10041349 [exp]	6.2	0.8232
AT1G69630			F-box/RNI-like superfamily pro...		Lus10006319 [exp]	7.5	0.8163
AT5G59750			DHBP synthase RibB-like alpha/...		Lus10040865 [exp]	7.6	0.7797
AT3G61790			Protein with RING/U-box and TR...		Lus10002761 [exp]	8.4	0.8031
AT3G61790			Protein with RING/U-box and TR...		Lus10016348 [exp]	10.8	0.7550
AT1G35340			ATP-dependent protease La (LON...		Lus10008251 [exp]	11.3	0.8225
AT1G76405			unknown protein		Lus10025161 [exp]	15.2	0.8067
AT3G56160			Sodium Bile acid symporter fam...		Lus10043443 [exp]	16.2	0.8141

Compare expression of checked genes

Lus10035876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.