Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15240 938 / 0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) AT2G15900 186 / 5e-48 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025785 [exp] 1878 / 0 AT1G15240 953 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10027939 [exp] 217 / 1e-57 AT2G15900 1001 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10012043 [exp] 166 / 7e-45 AT2G15900 404 / 1e-133 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10023847 [exp] 142 / 3e-34 AT2G15900 606 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10012042 [exp] 131 / 5e-32 AT2G15900 495 / 9e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10025786 [exp] 74 / 1e-14 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183100 [exp] 1246 / 0 AT1G15240 512 / 1e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Potri.003G053200 [exp] 1229 / 0 AT1G15240 986 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Potri.004G146600 [exp] 215 / 4e-57 AT2G15900 1073 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Potri.009G108300 [exp] 211 / 1e-55 AT2G15900 1117 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02194 [flax] [poplar] PXA PXA domain PF00787 [flax] [poplar] PX PX domain PF08628 [flax] [poplar] Nexin_C Sorting nexin C terminal
Representative CDS sequence Show only first row Show all	>Lus10035877 pacid=23141065 polypeptide=Lus10035877 locus=Lus10035877.g ID=Lus10035877.BGIv1.0 annot-version=v1.0 ATGAGCTCAGAACAGCAGCATCAGCAGCGGCAGGCGATAGTGAAGGACCTTGTGGAGGAGGCCAAGAAGAGAATCGTGATTTTGGCAATCTGCGTCGTGG GTTTATCATATCTCATGTCTTTGACAAGCTCCTCGGTGTGGGTCAACTTACCAGCTGCTGCCTTCCTGATCATTATCCTTCGTTATTTTTCCTTGGATAT TGAAATGAAGAGAAAAACTGCAACCTATGTTAGCAAACCCTTGCAGCCAAGCGCAACACCTCAGGATAAACCGCACTATGCAAGGATTATTCAGAAGTCA ATATGGAGGAAGAAAGTAAACTCTCCGGCTGTTGAGGATGCAATAAATAACTTTACGAAGCATCTTGTGTCCGAGTGGGTCACCGATCTATGGTATGGTC GCTTGACACCTGATAAACAGGGACCAGAAGAGCTGGTAGAGATAATGAATGGAGTCCTCGGAGAACTCTCCGCTCGTTTGAGAGATATAAATCTACTTGA TCTCTTAACAAGGGATCTCATTAACCTTCTCTGCTCCCACTTGGTGCTTTTCCGATCAAGTCAAGCAAAGATTGCAAAGAAACAGCCGGATTTGCTGTCC ATTGAGCAGCGAGACAGAGAAATTAAACGAGTACTTGCTAACGAGAACAAACTGCACCCTGCTTTATTTTCTGCCGAAGCTGAACACAAGGTCTTGCAGC ATCTGATGGACGGATTAATTTCGTTTACATTTAGGCCAGAAGATCTAAAATGCTCTTTTTTCGGTTATCTTGCAAGGGAGCTTCTTGCTTGTGCGGTGAT GCGACCAGTCTTAAACTTGGCTTCTCCAAGGTTTCTTAATGAAAGGATTGAGATTTTGGTAAAGTCCAAGAGTAAGAGGGGACTAGCTTCGGCAGATGGA ACATCCCTGTCGAAACCAAACGAGAATTTGAGGGCCTATGATCACTCTCCTAAATTCTTAGATCCTACTGGTACTGGTGTTGAACTTGTACAGTTGAAAA ATGATGCCTCTAAAAATCGGGACGGTATTCCTGAAACAGATAATACAAATGCCATCCGTATTTCCAAAGATCCTTTACTTTCTATTGACACTCGGTCTAC ACGTTCGTGGAGTTCTTTGCCTTCGAACTCTCAAGTTAGCAATCTGGCAGGCGGTCAACAAAATCCTCCAGGAGAACAATGGGGGGACATGTTGGATGTT ATTTCAAAGAGAAAAACGGCAGCTCTTGCTCCAGAAAATTTTGAGAATATGTGGACAAAAGGGATGAATTACAATAGAAATGGAGGTGGAAATGGGTTGA TAGAACAAGTACGACATACGTCTTCTTCTAGCAAGTCAATTGCAGGTTCAAAAAACAATTTTGAAGGCCAGAATAAGGATGGTATGACCAATCTTGATTC TCCTCTTTCTTCCAATACTGTTAAGTCTTTAGGTTATAGTCAGCCAAGAGTACCAAACCATGTCAATCTTATAACTGAGAGCAGATTAAATTCTTTAATG CACACTTCTTACTTAGATGATGGTGAGCAGACAATGACGAGTGAGGATGGAGACGTATCAGATTCTAGTAGTGCCAGCCATTATTTATATGAAGAAGAAG ATGCAATTGATATCACTGGCCTTCATTCTCCCGGAACTAAAGTTTGGGATGGAAAAAGTAAAAGAAATATGCCTGTTTCCCACATTCATCATCCTCTTGA GAATCCAAAGGGCCGTGGTGTACAGAGGCCTAGCAAAGAGCAAACTCGTCCTCTAAGACTATCTGGACGGCATACTGGGAAGAAAAGGTCAAGATCAAGT AATCCGGGCATACATGTCTGGCAAGAGGTTGAGAGAACTAGTTTCTTATCTGGTGATGGGCAGGATGTACTTAGTGCTAAAGGATGCACTAAAACTGATG ATTCTACAGATGATTCGGAGGTTGAAAGTCTTGGTAGGCTTTCCAGTGCAACAGCTGCTTGTTCATCCAGAATCTTGCTTCCTACTGCCGAAGTTCATAC CCCTTCTGATATTTCTGCGAAAACGATGATGTTAGACTCCTTCTATAAGTTGAAATGCGAGGTGCTGGGTGCAAATATTGTAAAGGGTGACTCCACGACA TTTGCTGTATATTCCATATCGGTAACAGATGTGAATAGTAACAGCTGGTCTATCAAAAGAAGGTTTCGACATTTTGAGGAGTTGCATCGACGTCTAAAAG AGTACCCCGAATATAGCCTTCATTTGCCTCCAAAGCATTTTCTCTCAACAGGCTTAGATATGTCAGTCATTCAAGAACGCTGTAAACTGCTTGACAGATA TCTCAAGAAGCTGCTTCAAATTCCAAGAGTATCAGGATCTATTGAAGTTTGGGATTTCCTTAGTGTTGATTCTCAGACATATGGTTTCTCTAGTTCCTTC TCAATTGTTGAGACATTGTCTGGGAAGTCTAAATCGAAGGTAAATGAGAGCATAGACAATGTGCCAAATTGTGTGCGGAAAAGACTTGGTAAAGATCTTC AAAAACCATTCGAAGATTCAGGCAGTGATTCAGATGTTCAAAGCAATATTTCACAGGTCAGAAATTTAGCTGAAACTGCAGAAAGAAGTGAGAGCAGGCA GGGAGCAACAAAGTCATTTCACGCTGCCCCTGTAGACTCTAATATTCCTCCTGAGTGGGTGCCACCAAATTTAGCACTTCCTCTCTTAGATTTGGTAGGT ATCATTTTCCAGATGCAAGAAGGGGGATGGATCAGAAGGAAAGCATTTTGGATGGCTAAACAGGTATTGCAACTGGGAATGGGGGATGCTTTGGATGATT GGTTAATAGAGAAAATCCAGCTCCTTCGTAGAGGTTCAGTCATTGCGTCGGGGATCAAGCGGGTTGAACAGATACTGTGGCCCGATGGTATATTTATAAC CAAACACCCAAGTCGACGGCCACCATCTACTGTTGATGCAGCCAGTGGTTCTTCCAAAAAAGATCAAGCAGTAGATTTGTCTTCACCAAAACAGAGTTCA CCTATCAGCCGGCAACCCTCAGTTTTATCTCCTCCTCAATTGAGTGAGGAGCAGCAAAGGGATGCAGAAAGACGTGCTAAGTTTGTCTATGAGCTAATGA TTGATAATGCCCCAAGCACTATCATAGGGCTTGTCGGCCGAAAGGAGTATGAGCAATGTGTTAAAGATGTCTATTTCTTTATTCAGTCACCAGTTTGTAT GAAGCAGCTGGCTTATGATCTCATTGAGCTGCTTCTGTTGTCGGCATTTCCGGAGATGGATTACGTGTTCAGACAGTTGCACGAGGAAAAGAACAAGTTC GGGGAACTTAAAGCACAAGACTGA
AA sequence Show only first row Show all	>Lus10035877 pacid=23141065 polypeptide=Lus10035877 locus=Lus10035877.g ID=Lus10035877.BGIv1.0 annot-version=v1.0 MSSEQQHQQRQAIVKDLVEEAKKRIVILAICVVGLSYLMSLTSSSVWVNLPAAAFLIIILRYFSLDIEMKRKTATYVSKPLQPSATPQDKPHYARIIQKS IWRKKVNSPAVEDAINNFTKHLVSEWVTDLWYGRLTPDKQGPEELVEIMNGVLGELSARLRDINLLDLLTRDLINLLCSHLVLFRSSQAKIAKKQPDLLS IEQRDREIKRVLANENKLHPALFSAEAEHKVLQHLMDGLISFTFRPEDLKCSFFGYLARELLACAVMRPVLNLASPRFLNERIEILVKSKSKRGLASADG TSLSKPNENLRAYDHSPKFLDPTGTGVELVQLKNDASKNRDGIPETDNTNAIRISKDPLLSIDTRSTRSWSSLPSNSQVSNLAGGQQNPPGEQWGDMLDV ISKRKTAALAPENFENMWTKGMNYNRNGGGNGLIEQVRHTSSSSKSIAGSKNNFEGQNKDGMTNLDSPLSSNTVKSLGYSQPRVPNHVNLITESRLNSLM HTSYLDDGEQTMTSEDGDVSDSSSASHYLYEEEDAIDITGLHSPGTKVWDGKSKRNMPVSHIHHPLENPKGRGVQRPSKEQTRPLRLSGRHTGKKRSRSS NPGIHVWQEVERTSFLSGDGQDVLSAKGCTKTDDSTDDSEVESLGRLSSATAACSSRILLPTAEVHTPSDISAKTMMLDSFYKLKCEVLGANIVKGDSTT FAVYSISVTDVNSNSWSIKRRFRHFEELHRRLKEYPEYSLHLPPKHFLSTGLDMSVIQERCKLLDRYLKKLLQIPRVSGSIEVWDFLSVDSQTYGFSSSF SIVETLSGKSKSKVNESIDNVPNCVRKRLGKDLQKPFEDSGSDSDVQSNISQVRNLAETAERSESRQGATKSFHAAPVDSNIPPEWVPPNLALPLLDLVG IIFQMQEGGWIRRKAFWMAKQVLQLGMGDALDDWLIEKIQLLRRGSVIASGIKRVEQILWPDGIFITKHPSRRPPSTVDAASGSSKKDQAVDLSSPKQSS PISRQPSVLSPPQLSEEQQRDAERRAKFVYELMIDNAPSTIIGLVGRKEYEQCVKDVYFFIQSPVCMKQLAYDLIELLLLSAFPEMDYVFRQLHEEKNKF GELKAQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15240			Phox-associated domain;Phox-li...		Lus10035877 [exp]	0	1
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10025172 [exp]	1.0	0.8612
AT1G76630			Tetratricopeptide repeat (TPR)...		Lus10025170 [exp]	1.4	0.8605
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Lus10036447 [exp]	2.8	0.8321
AT2G39580			unknown protein		Lus10029459 [exp]	4.0	0.8090
AT4G38120			ARM repeat superfamily protein...		Lus10033267 [exp]	6.0	0.7966
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013074 [exp]	8.9	0.8175
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Lus10010242 [exp]	11.1	0.7470
AT5G38600			Proline-rich spliceosome-assoc...		Lus10003067 [exp]	12.1	0.7135
AT1G55750			BSD domain (BTF2-like transcri...		Lus10007089 [exp]	15.6	0.7998
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Lus10015536 [exp]	16.1	0.7243

Compare expression of checked genes

Lus10035877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.