Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15260 90 / 3e-22 unknown protein AT3G16070 78 / 5e-18 unknown protein AT3G24535 50 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025783 [exp] 344 / 1e-121 AT1G15260 97 / 3e-25 unknown protein Lus10011448 [exp] 137 / 1e-39 AT1G15260 89 / 9e-22 unknown protein Lus10037547 [exp] 132 / 6e-38 AT1G15260 88 / 2e-21 unknown protein Lus10034910 [exp] 98 / 2e-25 AT3G16070 72 / 3e-16 unknown protein Lus10023639 [exp] 93 / 2e-23 AT3G24535 72 / 4e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053600 [exp] 180 / 4e-57 AT1G15260 100 / 1e-26 unknown protein Potri.001G182500 [exp] 158 / 2e-48 AT3G16070 97 / 2e-25 unknown protein Potri.018G080001 [exp] 96 / 6e-24 AT1G15260 52 / 3e-08 unknown protein Potri.019G128400 [exp] 39 / 0.0009 AT2G30395 136 / 1e-40 ovate family protein 17 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035880 pacid=23141085 polypeptide=Lus10035880 locus=Lus10035880.g ID=Lus10035880.BGIv1.0 annot-version=v1.0 ATGCAGCTGAGAGAATCCATTGACAAGACCAAGACTTTCCTCCGAAACACTCTCCTAAACCTCAAGTCTCTTCTGTTTGATGGGTACCAGAAGCTTCCCA GACCTCATTTCAACCCTTTCTCCTGTGCCAATGGCGGCAACACCACCACCAACCCAGATCACTTGGCAGATCATGAGTACTACACCAACTTCTGCAATGA GCTTGAGTGTGATCTTGACAAGATTATTAGGCTGAACTCCAACACCACAATCATAGGAGACATTCAGCCAACTTTCCATGCTGTGAGTCCCTTGAAGGAA GAGAAGAATAGCAGCAAGAAAACCAGTGATTGTAAGATATATGATGTTCAAGAAGTAGAAGAAGAGCAAGGTTCGTCAATCAAGAAGAAGAAGAAGAAGA AGACGAAGAAAAAGATTAGCAATGAAGACAGCTACTTGTTGGCAAGGAAGATGAAGGAACTGGAGATGATGGATGTGAGTGATATGGAACATGTTCTGGA TGTGGAAGAGGCTATTCACTACTATTCTCGACTCAAGAGCCCTGTCTATCTCGACATTGTTGACAAGTTCTTCACTGATATCTACCAAGACTTCTCTATC TCTCAGGGGTCTTCTACTGTTACAGTCAACAGCTCTAAAAGGAGGCTTGGCTCCTTCAGATTATAA
AA sequence Show only first row Show all	>Lus10035880 pacid=23141085 polypeptide=Lus10035880 locus=Lus10035880.g ID=Lus10035880.BGIv1.0 annot-version=v1.0 MQLRESIDKTKTFLRNTLLNLKSLLFDGYQKLPRPHFNPFSCANGGNTTTNPDHLADHEYYTNFCNELECDLDKIIRLNSNTTIIGDIQPTFHAVSPLKE EKNSSKKTSDCKIYDVQEVEEEQGSSIKKKKKKKTKKKISNEDSYLLARKMKELEMMDVSDMEHVLDVEEAIHYYSRLKSPVYLDIVDKFFTDIYQDFSI SQGSSTVTVNSSKRRLGSFRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15260			unknown protein		Lus10035880 [exp]	0	1
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	2.4	0.9834
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10000279 [exp]	3.2	0.9833
					Lus10014719 [exp]	4.2	0.9794
AT5G50230			Transducin/WD40 repeat-like su...		Lus10015925 [exp]	4.9	0.9679
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015169 [exp]	5.5	0.9686
					Lus10008816 [exp]	6.3	0.9697
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10032179 [exp]	6.4	0.9205
AT3G09870			SAUR-like auxin-responsive pro...		Lus10004014 [exp]	6.7	0.9618
					Lus10024084 [exp]	7.0	0.9674
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022505 [exp]	7.2	0.9568

Compare expression of checked genes

Lus10035880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.