Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14220 128 / 2e-36 Ribonuclease T2 family protein (.1) AT1G26820 127 / 4e-36 RNS3 ribonuclease 3 (.1) AT2G02990 125 / 3e-35 RNS1, ATRNS1 ribonuclease 1 (.1) AT1G14210 100 / 2e-25 Ribonuclease T2 family protein (.1) AT2G39780 89 / 2e-21 RNS2 ribonuclease 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035881 [exp] 456 / 7e-166 AT2G02990 130 / 4e-37 ribonuclease 1 (.1) Lus10003110 [exp] 368 / 8e-131 AT1G26820 142 / 4e-42 ribonuclease 3 (.1) Lus10022385 [exp] 206 / 5e-65 AT1G26820 92 / 2e-21 ribonuclease 3 (.1) Lus10012823 [exp] 124 / 4e-35 AT2G02990 334 / 2e-117 ribonuclease 1 (.1) Lus10030468 [exp] 123 / 2e-34 AT2G02990 341 / 3e-120 ribonuclease 1 (.1) Lus10027978 [exp] 122 / 3e-34 AT1G14220 330 / 4e-116 Ribonuclease T2 family protein (.1) Lus10015409 [exp] 85 / 1e-19 AT1G14220 79 / 8e-18 Ribonuclease T2 family protein (.1) Lus10041084 [exp] 67 / 4e-13 AT2G39780 306 / 2e-104 ribonuclease 2 (.1.2) Lus10023371 [exp] 66 / 1e-12 AT1G14220 76 / 1e-16 Ribonuclease T2 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168700 [exp] 124 / 5e-35 AT2G02990 337 / 2e-118 ribonuclease 1 (.1) Potri.008G086700 [exp] 124 / 6e-35 AT2G02990 310 / 8e-108 ribonuclease 1 (.1) Potri.008G086800 [exp] 120 / 1e-33 AT1G26820 288 / 1e-99 ribonuclease 3 (.1) Potri.014G174400 [exp] 90 / 1e-21 AT2G39780 371 / 5e-131 ribonuclease 2 (.1.2) Potri.013G134400 [exp] 79 / 4e-17 AT2G02990 82 / 4e-18 ribonuclease 1 (.1) Potri.010G168600 [exp] 68 / 2e-14 AT1G26820 147 / 1e-45 ribonuclease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00445 [flax] [poplar] Ribonuclease_T2 Ribonuclease T2 family
Representative CDS sequence Show only first row Show all	>Lus10035882 pacid=23141221 polypeptide=Lus10035882 locus=Lus10035882.g ID=Lus10035882.BGIv1.0 annot-version=v1.0 ATGGGTGTAGTTGGTTTGACGGCCATAGTGCTAGGGCAGCTGCTGGTGGGGGTTGGCAATAAAACCACTGCAAATGCCCAAATAAACTTCGATTTCTTTT ACTTAGTGATGCAATGGCCTCCTGCATACTGCAACCAACCTGGAGCCAACTGCAGAACTCCCATCATCAACAACAGCTTCACCATTCATGGAATGTGGCC TCAGAAGAACAACGGCCAAAGCCCTCAAAACTGTCCTGGCTCTGTCCCTGACGTCCGAAGAAGCGGACGTGTGGATGCACCGACGATGGCCCTACTAGAC AGGCACTGGCCGAATCTACAGCGACCTCCGAACAGCGTGTTTTGGACTTACGAGTGGAATAAGCACGGAACCTGCTCCGGCTGGACTCTACAAAAATACT TCCAAACCGCGGTTGGCCAAGCTTTGAATGTCAACGTGTTCCAGAAGCTTGCCAGTGCAGGTATCCGACCCAATAACCGATTGTATCGACTCAACGCCAT CCGTAACTCCTTTGGGGCATATAACCCTGTAGTGAACTGCAACAGCAATAGGAACGTGGCTCAGATCAAAGAGATATGGGTATGTGTTCTAAAAGATGGA TCCAGTCTATTTAGCTGCCCGCCCGGATCTCGCCCATCTCGAAACTGCGGCACTGGATCCAACCCAAATGTCCTCTTTCCTTCTTAA
AA sequence Show only first row Show all	>Lus10035882 pacid=23141221 polypeptide=Lus10035882 locus=Lus10035882.g ID=Lus10035882.BGIv1.0 annot-version=v1.0 MGVVGLTAIVLGQLLVGVGNKTTANAQINFDFFYLVMQWPPAYCNQPGANCRTPIINNSFTIHGMWPQKNNGQSPQNCPGSVPDVRRSGRVDAPTMALLD RHWPNLQRPPNSVFWTYEWNKHGTCSGWTLQKYFQTAVGQALNVNVFQKLASAGIRPNNRLYRLNAIRNSFGAYNPVVNCNSNRNVAQIKEIWVCVLKDG SSLFSCPPGSRPSRNCGTGSNPNVLFPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14220			Ribonuclease T2 family protein...		Lus10035882 [exp]	0	1
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10035881 [exp]	1.0	0.9942
					Lus10033874 [exp]	2.0	0.8459
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10009417 [exp]	4.0	0.7979
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023452 [exp]	6.0	0.8111
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10004781 [exp]	6.9	0.8642
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	9.5	0.8156
AT5G39150			RmlC-like cupins superfamily p...		Lus10003114 [exp]	11.0	0.8503
AT1G72940			Toll-Interleukin-Resistance (T...		Lus10041605 [exp]	11.5	0.7926
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10030078 [exp]	12.5	0.8042
AT5G38200			Class I glutamine amidotransfe...		Lus10035996 [exp]	13.6	0.8298

Compare expression of checked genes

Lus10035882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.